BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0020.1
(260 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 70 3e-13
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 66 2e-12
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 63 3e-11
AT4G09775.1 | non-LTR retroelement reverse transcriptase | Chr4:... 60 4e-11
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 57 2e-09
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 13/216 (6%)
Query: 27 EGEDVIALRIYVAWFLWKARNKCTFENIIPDNYRIIREAQVMYTEFSGSIFNLDQVEDER 86
+ E L ++ W LWK RN+ F + ++R A+ E+ I + +
Sbjct: 352 QWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWR--IRTEAESCGTK 409
Query: 87 PQ---AHIKFWVPPNLGKLKVNFDAAYM--NGKTTVAAVCRNDKGEF-VMALTASYSSSS 140
PQ + W PP +K N DA + N + + V RN+KGE M A S
Sbjct: 410 PQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKS 469
Query: 141 AMEAETRAVKLAITLALQLIDYECII-EGDAMTVINACSKDLEEVPWRIRPIVLEIQTDI 199
+EAE A++ A+ L+L Y +I E D+ +I + D E+ ++P + ++Q +
Sbjct: 470 VLEAELEAMRWAV-LSLSRFQYNYVIFESDSQVLIEILNND--EIWPSLKPTIQDLQRLL 526
Query: 200 LKFRKVEFSYCPREANVVAHLLAKYTVN-LNLDQTM 234
+F +V+F + PRE N +A +A+ +++ LN D +
Sbjct: 527 SQFTEVKFVFIPREGNTLAERVARESLSFLNYDPKL 562
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 37 YVAWFLWKARNKCTFENIIPDNYRIIREAQVMYTEFSGSIFNLDQVEDERPQAHIKF-WV 95
++ W LWK+RN+ F+ D ++R A + E+S + + + ++ W
Sbjct: 79 WLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWK 138
Query: 96 PPNLGKLKVNFDAAYM--NGKTTVAAVCRNDKGEFV-MALTASYSSSSAMEAETRAVKLA 152
P +K N DA + N + + + RN+ G + M A + + +EAE A++ A
Sbjct: 139 APPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWA 198
Query: 153 ITLALQLIDYECII-EGDAMTVINACSKDLEEVPWRIRPIVLEIQTDILKFRKVEFSYCP 211
+ L + +Y+ II E DA ++N + D + P ++P + +IQ + F +V+F + P
Sbjct: 199 V-LTMSRFNYKRIIFESDAQALVNLLNSD-DFWP-TLQPALEDIQQLLHHFEEVKFEFTP 255
Query: 212 REANVVAHLLAKYTVNLN 229
R N VA +A+ +++ +
Sbjct: 256 RGGNKVADRIARESISFS 273
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 15/210 (7%)
Query: 34 LRIYVAWFLWKARNKCTFENIIPDNYRIIREAQVMYTEFSGSIFNLDQVEDER---PQAH 90
+ ++ W +WK+ N F + + A E+ + +Q R P +
Sbjct: 43 MPFWLMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRN 102
Query: 91 IKFWVPPNLGKLKVNFDAAYM--NGKTTVAAVCRNDKGEFVMALTASYSSS-SAMEAETR 147
K W PP KLK N+DA++ N + + + RN +G + + + EAE
Sbjct: 103 TK-WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECS 161
Query: 148 AVKLAITLALQLIDYECIIEGDAMTV---INACSKDLEEVPWRIRPIVLEIQTDILKFRK 204
+ AI + + I EGD T+ IN S + R++ + IQ+ I F
Sbjct: 162 TLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNP-----RLQHFLDTIQSWIPSFES 216
Query: 205 VEFSYCPREANVVAHLLAKYTVNLNLDQTM 234
+EFS+ RE N A LAK + N ++
Sbjct: 217 IEFSFKHREQNGCADFLAKQAIKENTQWSL 246
>AT4G09775.1 | non-LTR retroelement reverse transcriptase |
Chr4:6156629-6157054 FORWARD LENGTH=141 | 201606
Length = 141
Score = 59.7 bits (143), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 40 WFLWKARNKCTFENIIPDNYRIIREAQVMYTEFSGSIFN------LDQVEDERPQAHIKF 93
W LWK+RN+ F+ I +++ ++ + TE+ + N + ++RP K
Sbjct: 2 WRLWKSRNEFLFQQIDRFPWKVAQKGEQEATEWVETTINDTANSHSTEQPNDRPSGRSKE 61
Query: 94 WVPPNLGKLKVNFDAAYMNGK--TTVAAVCRNDKGEFVMALTASYSSS-SAMEAETRAVK 150
W PP G LK NFD+ Y+ G+ T+ + R+ G + + A S SA++AE
Sbjct: 62 WSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEA---- 117
Query: 151 LAITLALQLI 160
L ALQ++
Sbjct: 118 LGFLHALQMV 127
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 40 WFLWKARNKCTFENIIPDNYRIIREAQVMYTEFSGS---IFNLDQVE-----DERPQAHI 91
W LW++RN+ F++ ++ A+ E+ + I +L+ + R H
Sbjct: 2 WRLWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNRESTHQ 61
Query: 92 KFWVPPNLGKLKVNFDAA--YMNGKTTVAAVCRNDKGEFVMALTA-SYSSSSAMEAETRA 148
K W P +G +K N+D + Y +T + R+DKG + A A + ++A+E+E +A
Sbjct: 62 K-WEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQA 120
Query: 149 VKLAITLALQLIDYECIIEGDAMTV---INACSKDLEEVPWRIRPIVLEIQTDILKFRKV 205
+ +A+ + I EGD+ V +N W + E + +F +V
Sbjct: 121 LVMAMQHTWSQGYRKVIFEGDSKQVEELLNRKQMHFGAFNW-----IREAWSWSKRFEEV 175
Query: 206 EFSYCPREANVVAHLLAK 223
FS+ PR N A +LAK
Sbjct: 176 IFSWTPRTNNQPADMLAK 193