BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0030.1
(1454 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 111 8e-25
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 111 2e-24
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 108 5e-24
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 108 5e-24
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 86 4e-19
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 16/243 (6%)
Query: 1187 SIPIYFLSTNLVPKGVVEKIEQWQRNFWWGHSMEKTKMHYLNWKKMQAGLKEGGLGIRDM 1246
++P Y ++ L+PK V ++I +FWW + E MH+ W + EGG+G +D+
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 1247 GMVNQSMVGKLTWRFLTEPKALWVRLLKAKYLKTNNFWTYEAKLSSTST--WRSILEMRK 1304
N +++GK WR L+ P++L ++ K++Y ++ A L S + W+SI ++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSD--PLNAPLGSRPSFVWKSIHASQE 119
Query: 1305 FLKTGVCFMVGNGNTIRVWEDPWVPN------LRGFKPNKNDHGYEESNIFLVKDLINLD 1358
L+ G +VGNG I +W W+ + LR + ++ S+I V DLI+
Sbjct: 120 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYA-SVSSILKVSDLIDES 178
Query: 1359 GH-WNENLVKKIFDELSTKAILQI-PINNQGLDDKLWVHTEKGDFSTKSLY---TSIAKE 1413
G W +++++ +F E+ K I ++ P + LD W +T GD++ KS Y T I +
Sbjct: 179 GREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINK 238
Query: 1414 KSS 1416
+SS
Sbjct: 239 RSS 241
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 124/269 (46%), Gaps = 3/269 (1%)
Query: 1060 YAPSVSHLMFADDLFFFGKASESNVNQLKTILDSYASCSGQLINYQKSSIQFSTNCSLAR 1119
Y ++HL FADDL F +S++ + I +A SG I+ +KS+I +
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDND 62
Query: 1120 RKKILDILRVKEMKKDDVYLGNYLLKPKHKITSYDFIVKKIEKKLMGWKKSSLSHAGRTI 1179
+ IL YLG LL K + Y +V+KI ++ W LS AGR
Sbjct: 63 KADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 1180 LLKSELSSIPIYFLSTNLVPKGVVEKIEQWQRNFWWGHSMEKTKMHYLNWKKMQAGLKEG 1239
L+ S + S+ +++S +P +++I+ +F W TK + W + EG
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 1240 GLGIRDMGMVNQSMVGKLTWRFLTEPKALWVRLLKAKYLKTNNFWTYEAKLSSTS-TWRS 1298
GLGIR + N+ + KL WR L+ +LWV+ L+ L+ +FW+ + S W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 1299 ILEMRKFLKTGVCFMVGNGNTIRVWEDPW 1327
IL+ R V + NG+ W D W
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 126/272 (46%), Gaps = 9/272 (3%)
Query: 1060 YAPSVSHLMFADDLFFFGKASESNVNQLKTILDSYASCSGQLINYQKSSIQFSTNCSLAR 1119
Y ++HL FADDL F +S++ + I +A SG I+ +KS+I + +
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG----VK 59
Query: 1120 RKKILDILRVKEMKKDDV---YLGNYLLKPKHKITSYDFIVKKIEKKLMGWKKSSLSHAG 1176
DIL + YLG LL K + Y +V+KI ++ W LS AG
Sbjct: 60 DNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAG 119
Query: 1177 RTILLKSELSSIPIYFLSTNLVPKGVVEKIEQWQRNFWWGHSMEKTKMHYLNWKKMQAGL 1236
R L+ S + S+ +++S +P +++I+ +F W TK + W +
Sbjct: 120 RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 179
Query: 1237 KEGGLGIRDMGMVNQSMVGKLTWRFLTEPKALWVRLLKAKYLKTNNFWTYEAKLSSTS-T 1295
EGGLGIR + N+ + KL WR L+ +LWV+ L+ L+ +FW+ + S
Sbjct: 180 DEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWM 238
Query: 1296 WRSILEMRKFLKTGVCFMVGNGNTIRVWEDPW 1327
W+ IL+ R V + NG+ W D W
Sbjct: 239 WKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 126/272 (46%), Gaps = 9/272 (3%)
Query: 1060 YAPSVSHLMFADDLFFFGKASESNVNQLKTILDSYASCSGQLINYQKSSIQFSTNCSLAR 1119
Y ++HL FADDL F +S++ + I +A SG I+ +KS+I + +
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG----VK 59
Query: 1120 RKKILDILRVKEMKKDDV---YLGNYLLKPKHKITSYDFIVKKIEKKLMGWKKSSLSHAG 1176
DIL + YLG LL K + Y +V+KI ++ W LS AG
Sbjct: 60 DNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAG 119
Query: 1177 RTILLKSELSSIPIYFLSTNLVPKGVVEKIEQWQRNFWWGHSMEKTKMHYLNWKKMQAGL 1236
R L+ S + S+ +++S +P +++I+ +F W TK + W +
Sbjct: 120 RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 179
Query: 1237 KEGGLGIRDMGMVNQSMVGKLTWRFLTEPKALWVRLLKAKYLKTNNFWTYEAKLSSTS-T 1295
EGGLGIR + N+ + KL WR L+ +LWV+ L+ L+ +FW+ + S
Sbjct: 180 DEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWM 238
Query: 1296 WRSILEMRKFLKTGVCFMVGNGNTIRVWEDPW 1327
W+ IL+ R V + NG+ W D W
Sbjct: 239 WKKILKHRALASGFVKHDIHNGSNTSFWFDNW 270
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 86.3 bits (212), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 1187 SIPIYFLSTNLVPKGVVEKIEQWQRNFWWGHSMEKTKMHYLNWKKM-QAGLKEGGLGIRD 1245
++P+Y +S + K + +K+ FWW K K+ ++ W+K+ ++ +GGLG RD
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 1246 MGMVNQSMVGKLTWRFLTEPKALWVRLLKAKYLKTNNFWTYEAKLSSTSTWRSILEMRKF 1305
+G NQ+++ K ++R + +P L RLL+++Y ++ + WRSI+ R+
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121
Query: 1306 LKTGVCFMVGNGNTIRVWEDPWV 1328
L G+ +G+G +VW D W+
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWI 144