BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000010.1_g0170.1
         (138 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    66   1e-13

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 65.9 bits (159), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 8/141 (5%)

Query: 3   FTKDVKSAATTTTQFNAFF---DVHHSDSPTTILITPLLF-GDNYVSWFQGTKKALRAKD 58
             + +KS + T+   + ++   D+HH   P+   I  L    DNYV+W    +  LR   
Sbjct: 1   MAETIKSVSPTSDPDSPYYLPPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTK 57

Query: 59  KLGFVDGSFPKSSSPNDIHS-WERCNDLIASWIVNSVDPSIRSSIPYDDNVVDIWRNSFN 117
           K GF+DG+ PK    + ++  WE+CN ++  W++NS+   +  S+ Y +    +W +   
Sbjct: 58  KFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRR 117

Query: 118 HFHQTNAPKEFQLRRVISSLK 138
            F      K +QLRR +++L+
Sbjct: 118 VFVPCVDLKIYQLRRRLATLR 138

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