BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0230.1
(315 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 105 3e-25
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 105 3e-25
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 105 6e-25
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 82 7e-19
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 87 1e-18
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 105 bits (263), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 5/261 (1%)
Query: 2 FADDLLFLDQISDNNINQLKGLLEQYAGFSGQQINYHKSAMHFNNNCQSNRRREVMNILG 61
FADDLL ++I + + ++A FSG QI+ KS ++ + N + ++++
Sbjct: 13 FADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADILHSFP 71
Query: 62 VKEMEHDDIYLGNFLLKPKNRCTSYDCIVQKLSSKLSDWKRNSLSYAGRTVLLKNELATI 121
YLG LL K + Y +V+K+ ++ W LS+AGR L+ + + ++
Sbjct: 72 FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 131
Query: 122 PIYLLSTNLAPRKVLDEIEKHQRNFWW-GHDVGQKKMHFMSWRKLQTDQKQGGLGIRNMA 180
+ +S P + EI+ +F W G ++ KK ++W + T + +GGLGIR++
Sbjct: 132 TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWSDVCTPKDEGGLGIRSLK 190
Query: 181 IVNKALVGKLVWRFQTEKQALWVRLLTAKYLKHEDFWTHTY-THNATNTWKSMIEMRKEL 239
NK + KL+WR + +LWV+ L L+ FW+ + T + WK +++ R
Sbjct: 191 EANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALA 249
Query: 240 EPGRCMSIGNGVNTRIWEDPW 260
I NG NT W D W
Sbjct: 250 SGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 105 bits (263), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 5/261 (1%)
Query: 2 FADDLLFLDQISDNNINQLKGLLEQYAGFSGQQINYHKSAMHFNNNCQSNRRREVMNILG 61
FADDLL ++I + + ++A FSG QI+ KS ++ + N + ++++
Sbjct: 13 FADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADILHSFP 71
Query: 62 VKEMEHDDIYLGNFLLKPKNRCTSYDCIVQKLSSKLSDWKRNSLSYAGRTVLLKNELATI 121
YLG LL K + Y +V+K+ ++ W LS+AGR L+ + + ++
Sbjct: 72 FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 131
Query: 122 PIYLLSTNLAPRKVLDEIEKHQRNFWW-GHDVGQKKMHFMSWRKLQTDQKQGGLGIRNMA 180
+ +S P + EI+ +F W G ++ KK ++W + T + +GGLGIR++
Sbjct: 132 TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWSDVCTPKDEGGLGIRSLK 190
Query: 181 IVNKALVGKLVWRFQTEKQALWVRLLTAKYLKHEDFWTHTY-THNATNTWKSMIEMRKEL 239
NK + KL+WR + +LWV+ L L+ FW+ + T + WK +++ R
Sbjct: 191 EANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALA 249
Query: 240 EPGRCMSIGNGVNTRIWEDPW 260
I NG NT W D W
Sbjct: 250 SGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 105 bits (262), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 5/261 (1%)
Query: 2 FADDLLFLDQISDNNINQLKGLLEQYAGFSGQQINYHKSAMHFNNNCQSNRRREVMNILG 61
FADDLL ++I + + ++A FSG QI+ KS ++ + N + ++++
Sbjct: 13 FADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADILHSFP 71
Query: 62 VKEMEHDDIYLGNFLLKPKNRCTSYDCIVQKLSSKLSDWKRNSLSYAGRTVLLKNELATI 121
YLG LL K + Y +V+K+ ++ W LS+AGR L+ + + ++
Sbjct: 72 FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 131
Query: 122 PIYLLSTNLAPRKVLDEIEKHQRNFWW-GHDVGQKKMHFMSWRKLQTDQKQGGLGIRNMA 180
+ +S P + EI+ +F W G ++ KK ++W + T + +GGLGIR++
Sbjct: 132 TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWSDVCTPKDEGGLGIRSLK 190
Query: 181 IVNKALVGKLVWRFQTEKQALWVRLLTAKYLKHEDFWTHTY-THNATNTWKSMIEMRKEL 239
NK + KL+WR + +LWV+ L L+ FW+ + T + WK +++ R
Sbjct: 191 EANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALA 249
Query: 240 EPGRCMSIGNGVNTRIWEDPW 260
I NG NT W D W
Sbjct: 250 SGFVKHDIHNGSNTSFWFDNW 270
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 82.4 bits (202), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Query: 120 TIPIYLLSTNLAPRKVLDEIEKHQRNFWWGHDVGQKKMHFMSWRKL-QTDQKQGGLGIRN 178
+P+Y +S + + ++ FWW ++K+ +++W+KL ++ + GGLG R+
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 179 MAIVNKALVGKLVWRFQTEKQALWVRLLTAKYLKHEDFWTHTYTHNATNTWKSMIEMRKE 238
+ N+AL+ K +R + L RLL ++Y H + + W+S+I R+
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121
Query: 239 LEPGRCMSIGNGVNTRIWEDPWVPTQNGFRP 269
L G +IG+G++T++W D W+ + P
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMDETPLPP 152
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 5/198 (2%)
Query: 120 TIPIYLLSTNLAPRKVLDEIEKHQRNFWWGHDVGQKKMHFMSWRKLQTDQKQGGLGIRNM 179
+P Y ++ L P+ V +I +FWW + K MH+ +W L + +GG+G +++
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 180 AIVNKALVGKLVWRFQTEKQALWVRLLTAKYLKHEDFWTHTYTHNATNTWKSMIEMRKEL 239
N AL+GK +WR + ++L ++ ++Y D + WKS+ ++ L
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 240 EPGRCMSIGNGVNTRIWEDPWV---PTQNGFRPGK--NEEDDDIPNLYTVKELINLDTKK 294
G +GNG + IW W+ P R + +E + ++ V +LI+ ++
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 295 WDQNLINRVFDRISAREI 312
W +++I +F + + I
Sbjct: 182 WRKDVIEMLFPEVERKLI 199