BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0300.1
(289 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08940.2 | light harvesting complex photosystem II | Chr3:271... 477 e-172
AT5G01530.1 | light harvesting complex photosystem II | Chr5:209... 456 e-163
AT2G40100.1 | light harvesting complex photosystem II | Chr2:167... 385 e-135
AT3G08940.1 | light harvesting complex photosystem II | Chr3:271... 261 1e-87
AT2G40100.2 | light harvesting complex photosystem II | Chr2:167... 228 2e-75
>AT3G08940.2 | light harvesting complex photosystem II |
Chr3:2717717-2718665 FORWARD LENGTH=287 | 201606
Length = 287
Score = 477 bits (1228), Expect = e-172, Method: Compositional matrix adjust.
Identities = 234/276 (84%), Positives = 249/276 (90%), Gaps = 2/276 (0%)
Query: 15 FLGTRL-HDVQSNSGRFQARFGFGTKKSPPKKVKSPPTSDRPLWFPGAKAPEWLDGSLVG 73
+GTR+ D+ SNS RF ARFGFGTKK+ PKK K+ SDRPLWFPGAK+PE+LDGSLVG
Sbjct: 13 IMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTV-ISDRPLWFPGAKSPEYLDGSLVG 71
Query: 74 DYGFDPFGLGKPAEYLQYDFDGLDQNLAKNLAGDVIGTRFETSEVKSTPFQPYGEVFGLQ 133
DYGFDPFGLGKPAEYLQ+D D LDQNLAKNL G+VIGTR E + KSTPFQPY EVFGLQ
Sbjct: 72 DYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQ 131
Query: 134 RFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELVDGSSYLGLPLPFSITTLIWI 193
RFRECELIHGRWAMLATLGA+ VE LTGVTWQDAGKVELVDGSSYLG PLPFSI+TLIWI
Sbjct: 132 RFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWI 191
Query: 194 EVLIIGYIEFQRNAELDPELRIYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFL 253
EVL+IGYIEFQRNAELD E R+YPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FL
Sbjct: 192 EVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFL 251
Query: 254 GFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
GFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 252 GFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
>AT5G01530.1 | light harvesting complex photosystem II |
Chr5:209084-210243 FORWARD LENGTH=290 | 201606
Length = 290
Score = 456 bits (1173), Expect = e-163, Method: Compositional matrix adjust.
Identities = 231/277 (83%), Positives = 247/277 (89%), Gaps = 2/277 (0%)
Query: 15 FLGTRLH-DVQSNSGRFQARFGFGTKKSPPKKVKSPP-TSDRPLWFPGAKAPEWLDGSLV 72
+GTR+ + SGRF A FGFG KK+ PKK T+DRPLW+PGA +P+WLDGSLV
Sbjct: 14 IMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLV 73
Query: 73 GDYGFDPFGLGKPAEYLQYDFDGLDQNLAKNLAGDVIGTRFETSEVKSTPFQPYGEVFGL 132
GDYGFDPFGLGKPAEYLQ+D D LDQNLAKNLAGDVIGTR E ++ KSTPFQPY EVFG+
Sbjct: 74 GDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGI 133
Query: 133 QRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELVDGSSYLGLPLPFSITTLIW 192
QRFRECELIHGRWAMLATLGAL+VE LTGVTWQDAGKVELVDGSSYLG PLPFSI+TLIW
Sbjct: 134 QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIW 193
Query: 193 IEVLIIGYIEFQRNAELDPELRIYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAF 252
IEVL+IGYIEFQRNAELD E R+YPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAF
Sbjct: 194 IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAF 253
Query: 253 LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 254 LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>AT2G40100.1 | light harvesting complex photosystem II |
Chr2:16745884-16747190 FORWARD LENGTH=276 | 201606
Length = 276
Score = 385 bits (988), Expect = e-135, Method: Compositional matrix adjust.
Identities = 191/267 (71%), Positives = 219/267 (82%), Gaps = 10/267 (3%)
Query: 13 SSFLGTRLHDVQSNSGRFQARFGFG-------TKKSPPKKVKSPPTSDRPLWFPGAKAPE 65
S G R+ D + +GR QARFGF ++V+ DR +WFPGA PE
Sbjct: 10 SGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQD--DGDRLVWFPGANPPE 67
Query: 66 WLDGSLVGDYGFDPFGLGKPAEYLQYDFDGLDQNLAKNLAGDVIGTRFETSEVKSTPFQP 125
WLDGS++GD GFDPFGLGKPAEYLQYDFDGLDQNLAKN+AGD+IG E+SE+K TPFQP
Sbjct: 68 WLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQP 127
Query: 126 YGEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELVDGSSYLGLPLPF 185
Y EVFG+QRFRECELIHGRWAML TLGA+AVE+LTG+ WQDAGKVELV+GSSYLG PLPF
Sbjct: 128 YTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPF 187
Query: 186 SITTLIWIEVLIIGYIEFQRNAELDPELRIYPGGKFFDPLGLAADPEKKATLQLAEIKHA 245
S+TTLIWIEVL++GYIEFQRN+ELDPE RIYPGG +FDPLGLAADPEK TL+LAEIKH+
Sbjct: 188 SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHS 246
Query: 246 RLAMVAFLGFAVQAAATGKGPLNNWAT 272
RLAMVAFL FA+QAA TGKGP++ AT
Sbjct: 247 RLAMVAFLIFALQAAFTGKGPVSFLAT 273
>AT3G08940.1 | light harvesting complex photosystem II |
Chr3:2717717-2718400 FORWARD LENGTH=227 | 201606
Length = 227
Score = 261 bits (667), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 131/171 (76%), Positives = 143/171 (83%), Gaps = 2/171 (1%)
Query: 16 LGTRL-HDVQSNSGRFQARFGFGTKKSPPKKVKSPPTSDRPLWFPGAKAPEWLDGSLVGD 74
+GTR+ D+ SNS RF ARFGFGTKK+ PKK K+ SDRPLWFPGAK+PE+LDGSLVGD
Sbjct: 14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTV-ISDRPLWFPGAKSPEYLDGSLVGD 72
Query: 75 YGFDPFGLGKPAEYLQYDFDGLDQNLAKNLAGDVIGTRFETSEVKSTPFQPYGEVFGLQR 134
YGFDPFGLGKPAEYLQ+D D LDQNLAKNL G+VIGTR E + KSTPFQPY EVFGLQR
Sbjct: 73 YGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQR 132
Query: 135 FRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELVDGSSYLGLPLPF 185
FRECELIHGRWAMLATLGA+ VE LTGVTWQDAGKV + SS L L L F
Sbjct: 133 FRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRLCLAF 183
>AT2G40100.2 | light harvesting complex photosystem II |
Chr2:16745884-16746545 FORWARD LENGTH=185 | 201606
Length = 185
Score = 228 bits (582), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 127/166 (76%), Gaps = 9/166 (5%)
Query: 13 SSFLGTRLHDVQSNSGRFQARFGFG-------TKKSPPKKVKSPPTSDRPLWFPGAKAPE 65
S G R+ D + +GR QARFGF ++V+ DR +WFPGA PE
Sbjct: 10 SGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQD--DGDRLVWFPGANPPE 67
Query: 66 WLDGSLVGDYGFDPFGLGKPAEYLQYDFDGLDQNLAKNLAGDVIGTRFETSEVKSTPFQP 125
WLDGS++GD GFDPFGLGKPAEYLQYDFDGLDQNLAKN+AGD+IG E+SE+K TPFQP
Sbjct: 68 WLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQP 127
Query: 126 YGEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVE 171
Y EVFG+QRFRECELIHGRWAML TLGA+AVE+LTG+ WQDAGKVE
Sbjct: 128 YTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173