BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0350.1
(1174 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 244 4e-66
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 244 4e-66
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 115 1e-28
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 70 3e-13
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 61 5e-11
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 244 bits (622), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 248/487 (50%), Gaps = 34/487 (6%)
Query: 638 EPHSIEECRKRTDWVKWKEAIQTELNSLSKRNVFGPVVLTPNDVNPVGFKWVFVRKRNEN 697
EP + E + +++ W A+ E+ ++ + + L PN P+G KWV+ K N +
Sbjct: 85 EPSTYNEAK---EFLVWCGAMDDEIGAMETTHTWEICTLPPNK-KPIGCKWVYKIKYNSD 140
Query: 698 NEVIRYKARFVAQGFLQKPGIDYEETYSPVMDGITFRYLISLAVLEELEMNLMDVVTAYL 757
+ RYKAR VA+G+ Q+ GID+ ET+SPV + + +++++ + ++ +D+ A+L
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 758 YGKLDTDIYMKVPEGFKLPGGN---PRTMYSLKLNRALYGLKQAGRMWYNRLSEYLIKED 814
G LD +IYMK+P G+ G+ P + LK +++YGLKQA R W+ + S LI
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 815 YVNDLVCPCLFIKKGDVGFAILAVYVDDINLIGTPEELSKEAE-YLKKEFEMKDLGKTKF 873
+V F+K F + VYVDDI + + E + LK F+++DLG K+
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 874 CLGLQIERSTSGILVHQTLYTEKVLKRFNMENSYPLSTPM---VVRSLDALKDPFRPKEE 930
LGL+I RS +GI + Q Y +L + P S PM V S + D K
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 376
Query: 931 DETLLGPEVPYMSAIGALSYLAQCTRPDIAFAVNLLARYSSAPTKRHWIGVKQILRYLRG 990
Y IG L YL Q TR DI+FAVN L+++S AP H V +IL Y++G
Sbjct: 377 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 426
Query: 991 TTDMGLFYSKNLSGDSQVKGYTDAGYISDPHKGISQTGYVFTSGGTAFSWRSSKQSMPAT 1050
T GLFYS + Q++ ++DA + S S GY G + SW+S KQ + +
Sbjct: 427 TVGQGLFYSSQ--AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 1051 SSNHAEIIALHEATRECVWLRSIIEHIRSSSGLDSITKSPTVIHEDNSACIAQIREGYIK 1110
SS AE AL AT E +WL ++ PT++ DN+A I I +
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLP------LSKPTLLFCDNTAAI-HIATNAVF 537
Query: 1111 GDRTKHI 1117
+RTKHI
Sbjct: 538 HERTKHI 544
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 244 bits (622), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 248/487 (50%), Gaps = 34/487 (6%)
Query: 638 EPHSIEECRKRTDWVKWKEAIQTELNSLSKRNVFGPVVLTPNDVNPVGFKWVFVRKRNEN 697
EP + E + +++ W A+ E+ ++ + + L PN P+G KWV+ K N +
Sbjct: 85 EPSTYNEAK---EFLVWCGAMDDEIGAMETTHTWEICTLPPNK-KPIGCKWVYKIKYNSD 140
Query: 698 NEVIRYKARFVAQGFLQKPGIDYEETYSPVMDGITFRYLISLAVLEELEMNLMDVVTAYL 757
+ RYKAR VA+G+ Q+ GID+ ET+SPV + + +++++ + ++ +D+ A+L
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 758 YGKLDTDIYMKVPEGFKLPGGN---PRTMYSLKLNRALYGLKQAGRMWYNRLSEYLIKED 814
G LD +IYMK+P G+ G+ P + LK +++YGLKQA R W+ + S LI
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 815 YVNDLVCPCLFIKKGDVGFAILAVYVDDINLIGTPEELSKEAE-YLKKEFEMKDLGKTKF 873
+V F+K F + VYVDDI + + E + LK F+++DLG K+
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 874 CLGLQIERSTSGILVHQTLYTEKVLKRFNMENSYPLSTPM---VVRSLDALKDPFRPKEE 930
LGL+I RS +GI + Q Y +L + P S PM V S + D K
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 376
Query: 931 DETLLGPEVPYMSAIGALSYLAQCTRPDIAFAVNLLARYSSAPTKRHWIGVKQILRYLRG 990
Y IG L YL Q TR DI+FAVN L+++S AP H V +IL Y++G
Sbjct: 377 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 426
Query: 991 TTDMGLFYSKNLSGDSQVKGYTDAGYISDPHKGISQTGYVFTSGGTAFSWRSSKQSMPAT 1050
T GLFYS + Q++ ++DA + S S GY G + SW+S KQ + +
Sbjct: 427 TVGQGLFYSSQ--AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 1051 SSNHAEIIALHEATRECVWLRSIIEHIRSSSGLDSITKSPTVIHEDNSACIAQIREGYIK 1110
SS AE AL AT E +WL ++ PT++ DN+A I I +
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLP------LSKPTLLFCDNTAAI-HIATNAVF 537
Query: 1111 GDRTKHI 1117
+RTKHI
Sbjct: 538 HERTKHI 544
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 115 bits (289), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 13/235 (5%)
Query: 836 LAVYVDDINLIGTPEELSKEAEY-LKKEFEMKDLGKTKFCLGLQIERSTSGILVHQTLYT 894
L +YVDDI L G+ L + L F MKDLG + LG+QI+ SG+ + QT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 895 EKVLKRFNMENSYPLSTPMVVRSLDALKDPFRPKEEDETLLGPEVPYMSAIGALSYLAQC 954
E++L M + P+STP+ ++ ++ P D + S +GAL YL
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD---------FRSIVGALQYLT-L 112
Query: 955 TRPDIAFAVNLLARYSSAPTKRHWIGVKQILRYLRGTTDMGLFYSKNLSGDSQVKGYTDA 1014
TRPDI++AVN++ + PT + +K++LRY++GT GL+ KN V+ + D+
Sbjct: 113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN--SKLNVQAFCDS 170
Query: 1015 GYISDPHKGISQTGYVFTSGGTAFSWRSSKQSMPATSSNHAEIIALHEATRECVW 1069
+ S TG+ G SW + +Q + SS E AL E W
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 631 ITENDDYEPHSIEECRKRTDWVKWKEAIQTELNSLSKRNVFGPVVLTPNDVNPVGFKWVF 690
IT EP S+ K W +A+Q EL++LS RN +V P + N +G KWVF
Sbjct: 20 ITTTIKKEPKSVIFALKDPGWC---QAMQEELDALS-RNKTWILVPPPVNQNILGCKWVF 75
Query: 691 VRKRNENNEVIRYKARFVAQGFLQKPGIDYEETYSPVMDGITFRYLISLAVLEELEM 747
K + + + R KAR VA+GF Q+ GI + ETYSPV+ T R ++++A ++LE+
Sbjct: 76 KTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA--QQLEV 130
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 61.2 bits (147), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 955 TRPDIAFAVNLLARYSSAPTKRHWIGVKQILRYLRGTTDMGLFYSKNLSGDSQVKGYTDA 1014
TRPD+ FAVN L+++SSA V ++L Y++GT GLFYS + D Q+K + D+
Sbjct: 6 TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSA--TSDLQLKAFADS 63
Query: 1015 GYISDPHKGISQTGY 1029
+ S P S TG+
Sbjct: 64 DWASCPDTRRSVTGF 78