BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0450.1
(356 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39920.1 | C-CAP/cofactor C-like domain-containing protein | ... 352 e-120
AT3G57890.1 | Tubulin binding cofactor C domain-containing prote... 50 3e-06
AT3G57890.2 | Tubulin binding cofactor C domain-containing prote... 49 3e-06
>AT4G39920.1 | C-CAP/cofactor C-like domain-containing protein |
Chr4:18515882-18516919 FORWARD LENGTH=345 | 201606
Length = 345
Score = 352 bits (903), Expect = e-120, Method: Compositional matrix adjust.
Identities = 198/350 (56%), Positives = 256/350 (73%), Gaps = 8/350 (2%)
Query: 1 MEEDYSNTKEISSKALDLVAQKKHAAMLERLSDLHQSRVQQAISRKSDSNVSPSFESTQS 60
ME+D ++ ++ LD QKKH MLERLS HQ+R ++ S S S+ S + EST S
Sbjct: 1 MEDDGQSS---VAETLDPALQKKHHDMLERLSARHQAR--KSDSPDSSSSSSSTLESTSS 55
Query: 61 FLDRFSECRRSIELELDRCRHVSNSESRSSLKSDLDKVSISISDLEKLVAENSYFLPPYE 120
FL +FS+ +RSIE + R S+S S LKSDL ++S++I +LEKL+AENSYFLP YE
Sbjct: 56 FLAKFSDSKRSIESRIAESRLASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYE 115
Query: 121 VRSSLKTIADLKETFESVNNELLPKKKFSFKNKPAKKDPTTVVKEAEAHDSNVVPAEKCS 180
VRSSLK ++DLK++ + ++ EL+PKKKFSFK+K K P + + E + D + P
Sbjct: 116 VRSSLKIVSDLKQSLDILSGELVPKKKFSFKSKSTTKKPESKLPEIQKPDVVLPPK---L 172
Query: 181 FQLRDSPGFRNKEGVVLVKHFSSSKEGDFTLSDLSSCEIRLTGKLRALFIHRLRNCQIYA 240
+RDSPG RNK G LVK F S G+FTLSDL SC+++LTG + ALF+HRL+ C +Y
Sbjct: 173 VPVRDSPGLRNKHGETLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYT 232
Query: 241 GPVLGSILIEEVEDCLFMMASHQIRIHHAKKTDFYLRVRSRPIIEDCNNVRFAPYLLCYE 300
GPV+GSILI++VEDC+ ++ASHQIRIH A+K+DFYLRVRSRPIIED N VRFAPY L Y+
Sbjct: 233 GPVIGSILIDDVEDCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPYCLDYK 292
Query: 301 GIEEELKDCSLDEENGNWANVDDFRWLRAVQSPNWCVLPKEEHVSPVNIS 350
GI+E+LK L+EE NWANVDDFRWLRAVQSPNW +LP+EE VS + IS
Sbjct: 293 GIDEDLKTAGLEEETNNWANVDDFRWLRAVQSPNWSLLPEEERVSLLTIS 342
>AT3G57890.1 | Tubulin binding cofactor C domain-containing protein
| Chr3:21438271-21441695 FORWARD LENGTH=573 | 201606
Length = 573
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 179 CSFQLRDSPGFRNK---EGVV---LVKHFSSSKEGDFTLSDLSSCEIRLTGKLRALFIHR 232
C+ + +P R EGV LVK S + + + I L LR +H
Sbjct: 304 CAAPNKVAPSTRGPCLIEGVSKTSLVKQASDLRGRSVKVVNCHDSVIYLLAPLRYATVHG 363
Query: 233 LRNCQIYAGPVLGSILIEEVEDCLFMMASHQIRIHHAKKTDFYLRVRSRP-IIEDCNNVR 291
+ I G V +I +E E ++A+ ++ I + ++ F+L V RP I+ D + ++
Sbjct: 364 CSDTTIVLGAVGKAIKVEHCERVHVIVAAKRVCIANCRECVFFLGVNQRPLIVGDNHKLQ 423
Query: 292 FAPYLLCYEGIEEELKDCSLDEENGNW 318
APY Y +EE +++ L+ W
Sbjct: 424 VAPYNTFYSHLEEHMREVGLEPTINKW 450
>AT3G57890.2 | Tubulin binding cofactor C domain-containing protein
| Chr3:21438271-21441695 FORWARD LENGTH=609 | 201606
Length = 609
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 197 LVKHFSSSKEGDFTLSDLSSCEIRLTGKLRALFIHRLRNCQIYAGPVLGSILIEEVEDCL 256
LVK S + + + I L LR +H + I G V +I +E E
Sbjct: 364 LVKQASDLRGRSVKVVNCHDSVIYLLAPLRYATVHGCSDTTIVLGAVGKAIKVEHCERVH 423
Query: 257 FMMASHQIRIHHAKKTDFYLRVRSRP-IIEDCNNVRFAPYLLCYEGIEEELKDCSLDEEN 315
++A+ ++ I + ++ F+L V RP I+ D + ++ APY Y +EE +++ L+
Sbjct: 424 VIVAAKRVCIANCRECVFFLGVNQRPLIVGDNHKLQVAPYNTFYSHLEEHMREVGLEPTI 483
Query: 316 GNW 318
W
Sbjct: 484 NKW 486