BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0470.1
(691 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 71 2e-13
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 60 2e-10
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 50 4e-06
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 43 NYSLWSQVVETFIAGRGKLGYINGRNIEPQIQDPIYDKWCMENAIVKGWLIGVMEPDVMN 102
NY W +F+ K G+I+G +P P+Y W NA+V WL+ M ++
Sbjct: 41 NYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLE 100
Query: 103 LFIRLPTAKAIWEAVSRTYFEGADRSVIYNLTRKSMQMRQTGKLVSTYFADLRAIWDELD 162
+ TA +WE + R + D IY L R+ +RQ G V YF L +W EL
Sbjct: 101 SVMYAETAHKMWEDLRRVFVPCVDLK-IYQLRRRLATLRQGGDSVEEYFGKLSKVWMELS 159
Query: 163 ------------------------------------YRLDDVYDRVRSDILRTDPFPNLD 186
+L+ ++ V + I+ P P+L
Sbjct: 160 EYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLH 219
Query: 187 SAFAIVRGEE 196
AFA+V+ E
Sbjct: 220 EAFAMVKDAE 229
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 383 DDVCIRKGLAITGSSHVKE---DQIWLWHKRLGHASFGYLQYLFPRLF-SGCDISNFN-C 437
D + I +G TG S++ E D+ LWH RL H S ++ L + F +S+ C
Sbjct: 45 DSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFC 104
Query: 438 ETCILAKSHRASYYSSKNKTLLPFELVHSDVWGPAPV 474
E CI K+HR ++ + ++ T P + VHSD+WG V
Sbjct: 105 EDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 21/179 (11%)
Query: 37 VKLNGINYSLWSQVVETFIAGRGKLGYINGRNIEPQIQDPIYDKWCMENAIVKGWLIGVM 96
+ LN +NY +W ++ ET G LG+I+G + + + +W + +VK W+ G +
Sbjct: 26 LDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE---KRWKERDGLVKMWIYGTI 82
Query: 97 EPDVMNLFIRLP-TAKAIWEAVSRTY----------FEGADRSV------IYNLTRKSMQ 139
+++ I++ TA+ +W ++ + FE R+ ++ +K
Sbjct: 83 TDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKS 142
Query: 140 MRQTGKLVSTYFADLRAIWDELDYRLDDVYDRVRSDILRTDPFPNLDSAFAIVRGEEQR 198
+ V + +D R + L L + YD + + I PFP+ A +++ EE R
Sbjct: 143 LSDLLTNVDSPISD-RVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEESR 200