BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0500.1
(185 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19950.1 | RING/U-box superfamily protein | Chr3:6942853-6943... 86 5e-20
AT3G19950.3 | RING/U-box superfamily protein | Chr3:6942679-6943... 86 7e-20
AT3G19950.2 | RING/U-box superfamily protein | Chr3:6942679-6943... 86 7e-20
AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protei... 81 5e-18
AT1G21960.1 | RING/U-box superfamily protein | Chr1:7725972-7726... 78 7e-18
>AT3G19950.1 | RING/U-box superfamily protein | Chr3:6942853-6943839
FORWARD LENGTH=328 | 201606
Length = 328
Score = 85.9 bits (211), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 78 PIFRLNPDFFKYSATLPMSDIQRALAESS-NHIKMVPASQSSIDKLEKIEFHDDSQLTKN 136
P R+ +F Y + + + LAE+ N PAS+S+ID L ++ D ++
Sbjct: 154 PGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEM 213
Query: 137 TSCSVCLEEFEKGLVLTKMPCSHIFHSDCITHWLQTSHYCPICRFQMP 184
C+VC++EFE G + +MPC H+FH DC+ WL+ + CP+CRF++P
Sbjct: 214 NQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261
>AT3G19950.3 | RING/U-box superfamily protein | Chr3:6942679-6943839
FORWARD LENGTH=386 | 201606
Length = 386
Score = 85.9 bits (211), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 78 PIFRLNPDFFKYSATLPMSDIQRALAESS-NHIKMVPASQSSIDKLEKIEFHDDSQLTKN 136
P R+ +F Y + + + LAE+ N PAS+S+ID L ++ D ++
Sbjct: 212 PGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEM 271
Query: 137 TSCSVCLEEFEKGLVLTKMPCSHIFHSDCITHWLQTSHYCPICRFQMP 184
C+VC++EFE G + +MPC H+FH DC+ WL+ + CP+CRF++P
Sbjct: 272 NQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 319
>AT3G19950.2 | RING/U-box superfamily protein | Chr3:6942679-6943839
FORWARD LENGTH=386 | 201606
Length = 386
Score = 85.9 bits (211), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 78 PIFRLNPDFFKYSATLPMSDIQRALAESS-NHIKMVPASQSSIDKLEKIEFHDDSQLTKN 136
P R+ +F Y + + + LAE+ N PAS+S+ID L ++ D ++
Sbjct: 212 PGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEM 271
Query: 137 TSCSVCLEEFEKGLVLTKMPCSHIFHSDCITHWLQTSHYCPICRFQMP 184
C+VC++EFE G + +MPC H+FH DC+ WL+ + CP+CRF++P
Sbjct: 272 NQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 319
>AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein |
Chr3:17178837-17180024 REVERSE LENGTH=395 | 201606
Length = 395
Score = 80.9 bits (198), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 113 PASQSSIDKLEKIEFHDDSQLTKNTSCSVCLEEFEKGLVLTKMPCSHIFHSDCITHWLQT 172
PAS+S+I+ L ++E D +C+VC E FE G+ +MPC HIFH DCI WL
Sbjct: 190 PASKSAIESLPRVEI-SDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSI 248
Query: 173 SHYCPICRFQMP 184
+ CP+CRF++P
Sbjct: 249 RNSCPVCRFELP 260
>AT1G21960.1 | RING/U-box superfamily protein | Chr1:7725972-7726586
FORWARD LENGTH=204 | 201606
Length = 204
Score = 78.2 bits (191), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 104 ESSNHIKMV-PASQSSIDKLEKIEFHDDSQLTKNTS-CSVCLEEFEKGLVLTKMPCSHIF 161
E++N+I+++ PA++ +D+L + ++ + + S C++CLEEFEKG ++ +PC H F
Sbjct: 121 ETTNNIELIRPANKLVVDRLARKVYNKKKKSNSDASVCTICLEEFEKGEIVVTLPCGHEF 180
Query: 162 HSDCITHWLQTSHYCPICRFQMP 184
CI W H CP+CRF++P
Sbjct: 181 DDGCIGKWFLKDHVCPLCRFELP 203