BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0530.1
(682 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 349 e-107
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 349 e-107
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 123 2e-31
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 96 9e-23
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 64 4e-12
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 349 bits (895), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/533 (36%), Positives = 300/533 (56%), Gaps = 42/533 (7%)
Query: 137 RTRKPAISSDYLVY----LQESDFD------------------IGPKRDPNSFSEAINGE 174
RTRKPA DY + L D I ++P++++EA +
Sbjct: 37 RTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEA---K 93
Query: 175 KSALWYDAMKEEMESMAKNQVWDLVELPKGSKAIGCRWVYKTKRDSSGNVERYKARLVAK 234
+ +W AM +E+ +M W++ LP K IGC+WVYK K +S G +ERYKARLVAK
Sbjct: 94 EFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAK 153
Query: 235 GYTQKEGIDYHETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGHLGEEVYMVQP 294
GYTQ+EGID+ ETFSPV K S+++I+A+ A ++ LHQ+D+ AFLNG L EE+YM P
Sbjct: 154 GYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLP 213
Query: 295 EGFR----DENDRHLVCKLRKSIYGLKQASRQWYLKFHNVITSFGFTENIVDQCIYLKVS 350
G+ D + VC L+KSIYGLKQASRQW+LKF + FGF ++ D +LK++
Sbjct: 214 PGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKIT 273
Query: 351 GSKYIFLVLYVDDILLATSDLGLLHETKEFLSQNFEMKDLGEASYVIGIEIHRDRSKRSL 410
+ ++ +++YVDDI++ +++ + E K L F+++DLG Y +G+EI RS +
Sbjct: 274 ATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGI 331
Query: 411 GLSQKAYIERILERFRMHNCASLVAPIAKGEKLTLSQCPQNALEQGEMKDI-PYASAVGS 469
+ Q+ Y +L+ + C P+ +T S A G+ D Y +G
Sbjct: 332 NICQRKYALDLLDETGLLGCKPSSVPM--DPSVTFS-----AHSGGDFVDAKAYRRLIGR 384
Query: 470 LLYAQVCTRPDLAFVVGLLGRYQSNPGKEHWKAVKRVMRYLQGTKDYRLTYGYTDHLELV 529
L+Y Q+ TR D++F V L ++ P H +AV +++ Y++GT L Y ++L
Sbjct: 385 LMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQ 443
Query: 530 GYSDSDFAGCVDSRKSTSGYIFLLAGGAISWRSTKQTILATSTMEAEFIACYEATTQAIW 589
+SD+ F C D+R+ST+GY L ISW+S KQ +++ S+ EAE+ A AT + +W
Sbjct: 444 VFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMW 503
Query: 590 LRNFVSGLKIVDTIERPLKILCDNSAAVFFSKNNKSGSRSKHIDIKYLLVRDK 642
L F L++ + +P + CDN+AA+ + N R+KHI+ VR++
Sbjct: 504 LAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 349 bits (895), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/533 (36%), Positives = 300/533 (56%), Gaps = 42/533 (7%)
Query: 137 RTRKPAISSDYLVY----LQESDFD------------------IGPKRDPNSFSEAINGE 174
RTRKPA DY + L D I ++P++++EA +
Sbjct: 37 RTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEA---K 93
Query: 175 KSALWYDAMKEEMESMAKNQVWDLVELPKGSKAIGCRWVYKTKRDSSGNVERYKARLVAK 234
+ +W AM +E+ +M W++ LP K IGC+WVYK K +S G +ERYKARLVAK
Sbjct: 94 EFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAK 153
Query: 235 GYTQKEGIDYHETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGHLGEEVYMVQP 294
GYTQ+EGID+ ETFSPV K S+++I+A+ A ++ LHQ+D+ AFLNG L EE+YM P
Sbjct: 154 GYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLP 213
Query: 295 EGFR----DENDRHLVCKLRKSIYGLKQASRQWYLKFHNVITSFGFTENIVDQCIYLKVS 350
G+ D + VC L+KSIYGLKQASRQW+LKF + FGF ++ D +LK++
Sbjct: 214 PGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKIT 273
Query: 351 GSKYIFLVLYVDDILLATSDLGLLHETKEFLSQNFEMKDLGEASYVIGIEIHRDRSKRSL 410
+ ++ +++YVDDI++ +++ + E K L F+++DLG Y +G+EI RS +
Sbjct: 274 ATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGI 331
Query: 411 GLSQKAYIERILERFRMHNCASLVAPIAKGEKLTLSQCPQNALEQGEMKDI-PYASAVGS 469
+ Q+ Y +L+ + C P+ +T S A G+ D Y +G
Sbjct: 332 NICQRKYALDLLDETGLLGCKPSSVPM--DPSVTFS-----AHSGGDFVDAKAYRRLIGR 384
Query: 470 LLYAQVCTRPDLAFVVGLLGRYQSNPGKEHWKAVKRVMRYLQGTKDYRLTYGYTDHLELV 529
L+Y Q+ TR D++F V L ++ P H +AV +++ Y++GT L Y ++L
Sbjct: 385 LMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQ 443
Query: 530 GYSDSDFAGCVDSRKSTSGYIFLLAGGAISWRSTKQTILATSTMEAEFIACYEATTQAIW 589
+SD+ F C D+R+ST+GY L ISW+S KQ +++ S+ EAE+ A AT + +W
Sbjct: 444 VFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMW 503
Query: 590 LRNFVSGLKIVDTIERPLKILCDNSAAVFFSKNNKSGSRSKHIDIKYLLVRDK 642
L F L++ + +P + CDN+AA+ + N R+KHI+ VR++
Sbjct: 504 LAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 123 bits (308), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 120/235 (51%), Gaps = 10/235 (4%)
Query: 355 IFLVLYVDDILLATSDLGLLHETKEFLSQNFEMKDLGEASYVIGIEIHRDRSKRSLGLSQ 414
++L+LYVDDILL S LL+ LS F MKDLG Y +GI+I S L LSQ
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPS--GLFLSQ 58
Query: 415 KAYIERILERFRMHNCASLVAPIAKGEKLTLSQCPQNALEQGEMKDIPYASAVGSLLYAQ 474
Y E+IL M +C + P+ KL S + + + I VG+L Y
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLPL--KLNSSVSTAKYPDPSDFRSI-----VGALQYLT 111
Query: 475 VCTRPDLAFVVGLLGRYQSNPGKEHWKAVKRVMRYLQGTKDYRLTYGYTDHLELVGYSDS 534
+ TRPD+++ V ++ + P + +KRV+RY++GT + L L + + DS
Sbjct: 112 L-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDS 170
Query: 535 DFAGCVDSRKSTSGYIFLLAGGAISWRSTKQTILATSTMEAEFIACYEATTQAIW 589
D+AGC +R+ST+G+ L ISW + +Q ++ S+ E E+ A + W
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 96.3 bits (238), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Query: 161 KRDPNSFSEAINGEKSALWYDAMKEEMESMAKNQVWDLVELPKGSKAIGCRWVYKTKRDS 220
K++P S A+ K W AM+EE++++++N+ W LV P +GC+WV+KTK S
Sbjct: 25 KKEPKSVIFAL---KDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHS 81
Query: 221 SGNVERYKARLVAKGYTQKEGIDYHETFSPVSKKDSLRIIMALVAHFDL 269
G ++R KARLVAKG+ Q+EGI + ET+SPV + ++R I+ + ++
Sbjct: 82 DGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 63.5 bits (153), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 477 TRPDLAFVVGLLGRYQSNPGKEHWKAVKRVMRYLQGTKDYRLTYGYTDHLELVGYSDSDF 536
TRPDL F V L ++ S +AV +V+ Y++GT L Y T L+L ++DSD+
Sbjct: 6 TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65
Query: 537 AGCVDSRKSTSGYIFLL 553
A C D+R+S +G+ L+
Sbjct: 66 ASCPDTRRSVTGFCSLV 82