BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0560.1
(942 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 240 7e-66
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 240 7e-66
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 111 3e-27
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 65 5e-12
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 61 7e-11
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 240 bits (613), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 163/487 (33%), Positives = 251/487 (51%), Gaps = 34/487 (6%)
Query: 406 EPHSIEECRKRSDWVKWKEAILTELTSLSKRDVFGPVVLTPKDVNPVGFKWVFIRKRNEN 465
EP + E + +++ W A+ E+ ++ + L P + P+G KWV+ K N +
Sbjct: 85 EPSTYNEAK---EFLVWCGAMDDEIGAMETTHTWEICTL-PPNKKPIGCKWVYKIKYNSD 140
Query: 466 NEVVRYKARLVAQGFLQRPGIDYEETYSPVMDGITFRYLISLAVLEELEMNLMDVVTAYL 525
+ RYKARLVA+G+ Q+ GID+ ET+SPV + + +++++ + ++ +D+ A+L
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 526 YGKLDTDIYMKVPEGFTLPKGN---PCTMYSLKLNRALYGLKQSGRMWYNRLSEYLIKEG 582
G LD +IYMK+P G+ +G+ P + LK +++YGLKQ+ R W+ + S LI G
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 583 YVNDLICPCIFIKKEDAGFAILAVYVDDINLIGTLE-EISKAAEYLKKEFEMKDLGKTKF 641
+V F+K F + VYVDDI + + + + LK F+++DLG K+
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 642 CLGLQIERSTSGILVHQTLYTEKVLKRFNIENSYPLSTPM---VVRSLDALKDPFRPKEE 698
LGL+I RS +GI + Q Y +L + P S PM V S + D K
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 376
Query: 699 DEALLGPEVPYLSAIGALSYLAQCTRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRG 758
Y IG L YL Q TR DI+FAVN L+++S AP H V +IL Y++G
Sbjct: 377 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 426
Query: 759 TTDLGLFYSKNLSGDSQVKGYTDAGYISDPHKGISQTGYVFTSGGTAFSWRSSKQTMPAT 818
T GLFYS + Q++ ++DA + S S GY G + SW+S KQ + +
Sbjct: 427 TVGQGLFYSSQ--AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 819 SSNHAEIIALHEATRECVWLRSIIEHIRSSSGLVSITNSPTVIHEDNSACIAQIKEGYIK 878
SS AE AL AT E +WL ++ + PT++ DN+A I I +
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLP------LSKPTLLFCDNTAAI-HIATNAVF 537
Query: 879 GDRTKHI 885
+RTKHI
Sbjct: 538 HERTKHI 544
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 240 bits (613), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 163/487 (33%), Positives = 251/487 (51%), Gaps = 34/487 (6%)
Query: 406 EPHSIEECRKRSDWVKWKEAILTELTSLSKRDVFGPVVLTPKDVNPVGFKWVFIRKRNEN 465
EP + E + +++ W A+ E+ ++ + L P + P+G KWV+ K N +
Sbjct: 85 EPSTYNEAK---EFLVWCGAMDDEIGAMETTHTWEICTL-PPNKKPIGCKWVYKIKYNSD 140
Query: 466 NEVVRYKARLVAQGFLQRPGIDYEETYSPVMDGITFRYLISLAVLEELEMNLMDVVTAYL 525
+ RYKARLVA+G+ Q+ GID+ ET+SPV + + +++++ + ++ +D+ A+L
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 526 YGKLDTDIYMKVPEGFTLPKGN---PCTMYSLKLNRALYGLKQSGRMWYNRLSEYLIKEG 582
G LD +IYMK+P G+ +G+ P + LK +++YGLKQ+ R W+ + S LI G
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFG 258
Query: 583 YVNDLICPCIFIKKEDAGFAILAVYVDDINLIGTLE-EISKAAEYLKKEFEMKDLGKTKF 641
+V F+K F + VYVDDI + + + + LK F+++DLG K+
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 642 CLGLQIERSTSGILVHQTLYTEKVLKRFNIENSYPLSTPM---VVRSLDALKDPFRPKEE 698
LGL+I RS +GI + Q Y +L + P S PM V S + D K
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 376
Query: 699 DEALLGPEVPYLSAIGALSYLAQCTRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRG 758
Y IG L YL Q TR DI+FAVN L+++S AP H V +IL Y++G
Sbjct: 377 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKG 426
Query: 759 TTDLGLFYSKNLSGDSQVKGYTDAGYISDPHKGISQTGYVFTSGGTAFSWRSSKQTMPAT 818
T GLFYS + Q++ ++DA + S S GY G + SW+S KQ + +
Sbjct: 427 TVGQGLFYSSQ--AEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSK 484
Query: 819 SSNHAEIIALHEATRECVWLRSIIEHIRSSSGLVSITNSPTVIHEDNSACIAQIKEGYIK 878
SS AE AL AT E +WL ++ + PT++ DN+A I I +
Sbjct: 485 SSAEAEYRALSFATDEMMWLAQFFRELQLP------LSKPTLLFCDNTAAI-HIATNAVF 537
Query: 879 GDRTKHI 885
+RTKHI
Sbjct: 538 HERTKHI 544
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 111 bits (278), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 13/235 (5%)
Query: 604 LAVYVDDINLIGTLEEISKAAEY-LKKEFEMKDLGKTKFCLGLQIERSTSGILVHQTLYT 662
L +YVDDI L G+ + + L F MKDLG + LG+QI+ SG+ + QT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 663 EKVLKRFNIENSYPLSTPMVVRSLDALKDPFRPKEEDEALLGPEVPYLSAIGALSYLAQC 722
E++L + + P+STP+ ++ ++ P D + S +GAL YL
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD---------FRSIVGALQYLT-L 112
Query: 723 TRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRGTTDLGLFYSKNLSGDSQVKGYTDA 782
TRPDI++AVN++ + PT + +K++LRY++GT GL+ KN V+ + D+
Sbjct: 113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN--SKLNVQAFCDS 170
Query: 783 GYISDPHKGISQTGYVFTSGGTAFSWRSSKQTMPATSSNHAEIIALHEATRECVW 837
+ S TG+ G SW + +Q + SS E AL E W
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 386 INDTFVLSVATDIITENDDYEPHSIEECRKRSDWVKWKEAILTELTSLSKRDVFGPVVLT 445
+N + L++ T I EP S+ K W +A+ EL +LS+ + +L
Sbjct: 12 LNPKYSLTITTTI-----KKEPKSVIFALKDPGWC---QAMQEELDALSRNKTW---ILV 60
Query: 446 PKDVNP--VGFKWVFIRKRNENNEVVRYKARLVAQGFLQRPGIDYEETYSPVMDGITFRY 503
P VN +G KWVF K + + + R KARLVA+GF Q GI + ETYSPV+ T R
Sbjct: 61 PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120
Query: 504 LISLAVLEELEM 515
++++A ++LE+
Sbjct: 121 ILNVA--QQLEV 130
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 60.8 bits (146), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 723 TRPDIAFAVNLLARYSSAPTKRHWVGVKQILRYLRGTTDLGLFYSKNLSGDSQVKGYTDA 782
TRPD+ FAVN L+++SSA V ++L Y++GT GLFYS + D Q+K + D+
Sbjct: 6 TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSA--TSDLQLKAFADS 63
Query: 783 GYISDPHKGISQTGY 797
+ S P S TG+
Sbjct: 64 DWASCPDTRRSVTGF 78