BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0650.1
(199 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45530.1 | RING/U-box superfamily protein | Chr2:18756604-187... 193 4e-62
AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 54 1e-08
AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 53 1e-08
AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 52 3e-08
AT5G60580.3 | RING/U-box superfamily protein | Chr5:24354298-243... 53 4e-08
>AT2G45530.1 | RING/U-box superfamily protein |
Chr2:18756604-18757326 FORWARD LENGTH=240 | 201606
Length = 240
Score = 193 bits (490), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 107/147 (72%), Positives = 121/147 (82%), Gaps = 3/147 (2%)
Query: 39 VCQQTSSEEALIDLGCHCRGGLAKAHLSCISTWFSTRGSNKCEICQQIAVNVPPPESQPS 98
VC Q EE LI+LGC CRGGLAKAH SCI WF T+GSN+CEICQ +AVNV PPE+QP+
Sbjct: 76 VCLQ-DKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQCEICQVVAVNVTPPETQPT 134
Query: 99 RNYWIWRIDPTSTHHQRR--CYSPLWVAFSILIGGLLLDVLISISLGVSALPVNIIIGVL 156
NYW+WRIDP+ +R C+SPLWVAFSILIGGL+LDVLISI+LGVSALPVNIIIGV+
Sbjct: 135 TNYWVWRIDPSYRQEERERGCFSPLWVAFSILIGGLMLDVLISITLGVSALPVNIIIGVI 194
Query: 157 VVLGLGTALRLAFECCQEISIRRAVQR 183
VVLGLGTALRL E C E S+RRAV R
Sbjct: 195 VVLGLGTALRLTLEFCYEWSLRRAVHR 221
>AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr5:1755910-1756825 FORWARD LENGTH=204 | 201606
Length = 204
Score = 53.5 bits (127), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 50 IDLGCHCRGGLAKAHLSCISTWFSTRGSNKCEICQQIAVNVPPP---ESQPSRN 100
I+LGC C+ LA AH C TWF +G+ CE+C IA NV ES+ SRN
Sbjct: 97 IELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVGSVEVESEESRN 150
>AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr2:15882536-15883665 REVERSE LENGTH=207 | 201606
Length = 207
Score = 53.1 bits (126), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 48 ALIDLGCHCRGGLAKAHLSCISTWFSTRGSNKCEICQQIAVNV 90
I+LGC C+ LA AH C TWF +G CEICQ +A NV
Sbjct: 97 GAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARNV 139
>AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr5:23818768-23820018 FORWARD LENGTH=231 | 201606
Length = 231
Score = 52.4 bits (124), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 50 IDLGCHCRGGLAKAHLSCISTWFSTRGSNKCEICQQIAVNVPPPESQP 97
+ LGC C+G L AH C TWF +G+ CEIC +A+NV +S P
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVAGEQSNP 177
>AT5G60580.3 | RING/U-box superfamily protein |
Chr5:24354298-24356706 FORWARD LENGTH=487 | 201606
Length = 487
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 50 IDLGCHCRGGLAKAHLSCISTWFSTRGSNKCEICQQIAVNVPPP--ESQPSRNYWIWRID 107
+ + C C+G LA AH C WF+ +G+ CE+C+Q N+P Q RN + ++D
Sbjct: 271 LKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVKNLPVTLLRIQSLRNSGVPQLD 330
Query: 108 PTSTHHQRRCYSPLWVAFSILIGGLLLDVLISISLGVSA----LPVNIIIGVLVVLGLGT 163
+ + P+ V S+L L+ L+ ++G A LP + I+G+L + T
Sbjct: 331 VSGYRVWQEV--PVLVIISMLAYFCFLEQLLVENMGTGAIAISLPFSCILGLLASMTAST 388
Query: 164 ALRLAF 169
+ F
Sbjct: 389 MVMRRF 394