BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0670.1
(269 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45530.1 | RING/U-box superfamily protein | Chr2:18756604-187... 221 4e-72
AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 58 9e-10
AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein | Ch... 57 2e-09
AT5G03180.5 | RING/U-box superfamily protein | Chr5:754540-75641... 57 3e-09
AT5G03180.1 | RING/U-box superfamily protein | Chr5:754201-75641... 57 5e-09
>AT2G45530.1 | RING/U-box superfamily protein |
Chr2:18756604-18757326 FORWARD LENGTH=240 | 201606
Length = 240
Score = 221 bits (564), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 127/204 (62%), Positives = 147/204 (72%), Gaps = 17/204 (8%)
Query: 52 NNKDDLKIVISNGDLSNLDEPKLESTIDTKIDEVSDALKSPKKVCLSRNESSREQCRVCQ 111
N + L IV+ NGD S +E+ + K+V LSRN SS EQCRVC
Sbjct: 33 NESNHLTIVVCNGDSSR--------------EELVGQIPPEKEVSLSRNGSSHEQCRVCL 78
Query: 112 QTSSEEALIDLGCHCRGGLAKAHLSCISTWFSTRGSNKCEICQQIAVNVPPPESQPSRNY 171
Q EE LI+LGC CRGGLAKAH SCI WF T+GSN+CEICQ +AVNV PPE+QP+ NY
Sbjct: 79 Q-DKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQCEICQVVAVNVTPPETQPTTNY 137
Query: 172 WIWRIDPTSTHHQRR--CYSPLWVAFSILIGGLLLDVLISISLGVSALPVNIIIGVLVVL 229
W+WRIDP+ +R C+SPLWVAFSILIGGL+LDVLISI+LGVSALPVNIIIGV+VVL
Sbjct: 138 WVWRIDPSYRQEERERGCFSPLWVAFSILIGGLMLDVLISITLGVSALPVNIIIGVIVVL 197
Query: 230 GLGTALRLAFECCQEISIRSAVQR 253
GLGTALRL E C E S+R AV R
Sbjct: 198 GLGTALRLTLEFCYEWSLRRAVHR 221
>AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr5:1755910-1756825 FORWARD LENGTH=204 | 201606
Length = 204
Score = 57.8 bits (138), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 84 EVSDALKSPKKVCLSRNESSREQCRVCQQTSSEEAL-----IDLGCHCRGGLAKAHLSCI 138
E+ L P+KV + ++S R+ CR+C + L I+LGC C+ LA AH C
Sbjct: 58 EIDLELGLPEKV-VHLSQSERD-CRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCA 115
Query: 139 STWFSTRGSNKCEICQQIAVNVPPP---ESQPSRN 170
TWF +G+ CE+C IA NV ES+ SRN
Sbjct: 116 ETWFKIKGNKICEVCGSIAGNVVGSVEVESEESRN 150
>AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein |
Chr2:15882536-15883665 REVERSE LENGTH=207 | 201606
Length = 207
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 105 EQCRVCQ---QTSSEEALIDLGCHCRGGLAKAHLSCISTWFSTRGSNKCEICQQIAVNV 160
+ CR+C +TS A I+LGC C+ LA AH C TWF +G CEICQ +A NV
Sbjct: 82 KDCRICHLGVETSGGGA-IELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARNV 139
>AT5G03180.5 | RING/U-box superfamily protein | Chr5:754540-756411
REVERSE LENGTH=410 | 201606
Length = 410
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 30/175 (17%)
Query: 70 DEPKLESTIDTKIDEVSDALKS-PKKVCLSRNESSREQCRVCQ-QTSSEEALIDLGCHCR 127
DE +LE T +K++E D + P++ + CR+C + +E + C C+
Sbjct: 218 DEKRLEMTQASKLNENDDGGEDVPEEEAV---------CRICMVEMEEDEEAFKMECMCK 268
Query: 128 GGLAKAHLSCISTWFSTRGSNKCEICQQIAVNVPPP---------ESQPSRNYWIWRIDP 178
G LA AH +C WF+ +G+ C++C+Q N+P S+ +R+ I R +
Sbjct: 269 GELALAHKTCTIKWFTIKGNITCDVCKQEVRNLPVTLLRVQDSQNRSRAARDIEISRFNN 328
Query: 179 TSTHHQRRCYSPLWVAFSILIGGLLLDVLISISLGVS----ALPVNIIIGVLVVL 229
P+ V S+L L+ L+ I + S ALP + IIG+L +
Sbjct: 329 VWQD------IPILVIVSMLAYFCFLEQLLIIDMKSSAVAIALPFSCIIGLLASM 377
>AT5G03180.1 | RING/U-box superfamily protein | Chr5:754201-756411
REVERSE LENGTH=462 | 201606
Length = 462
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 30/175 (17%)
Query: 70 DEPKLESTIDTKIDEVSDALKS-PKKVCLSRNESSREQCRVCQ-QTSSEEALIDLGCHCR 127
DE +LE T +K++E D + P++ + CR+C + +E + C C+
Sbjct: 218 DEKRLEMTQASKLNENDDGGEDVPEEEAV---------CRICMVEMEEDEEAFKMECMCK 268
Query: 128 GGLAKAHLSCISTWFSTRGSNKCEICQQIAVNVPPP---------ESQPSRNYWIWRIDP 178
G LA AH +C WF+ +G+ C++C+Q N+P S+ +R+ I R +
Sbjct: 269 GELALAHKTCTIKWFTIKGNITCDVCKQEVRNLPVTLLRVQDSQNRSRAARDIEISRFNN 328
Query: 179 TSTHHQRRCYSPLWVAFSILIGGLLLDVLISISLGVS----ALPVNIIIGVLVVL 229
P+ V S+L L+ L+ I + S ALP + IIG+L +
Sbjct: 329 VWQD------IPILVIVSMLAYFCFLEQLLIIDMKSSAVAIALPFSCIIGLLASM 377