BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000010.1_g0710.1
(1285 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 159 3e-40
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 149 5e-37
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 126 7e-30
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 126 7e-30
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 125 1e-28
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 188/400 (47%), Gaps = 19/400 (4%)
Query: 95 IGDMNAVASRSEKMGG-TTHIPF--LQQFQDFIHNGGLLDMGFNGPAFTWTNNKSRHHLT 151
+GD + +A+ S+ T IP L++FQ+ + + L+D+ G +TW+N++ + +
Sbjct: 224 VGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPII 283
Query: 152 RERLDRALCNAEWLIFFPDS-GLFHLPRYSSDHAPILLKLRVETTIIQKIERFEWYWTKH 210
R +LDRA+ N +W FP + +F L S DH+P ++ L +K R+ + + H
Sbjct: 284 R-KLDRAIANGDWFSSFPSAIAVFELSGVS-DHSPCIIILENLPKRSKKCFRYFSFLSTH 341
Query: 211 SDYENTFQHNW----AATSGQFY--NKVIQVKKSTKYWSKRAFNMIQNRLVLLRERLIHI 264
+ + W S F + KK K +++ F IQ++ + L I
Sbjct: 342 PTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESI 401
Query: 265 QS---LTPTDVILNIESNFQEEILYLEEVERTRLEQRAKSKWVQNGDRNTKAFHVAIAHR 321
QS P+D + +E +++ + + Q+++ KW+Q+GD NT+ FH I
Sbjct: 402 QSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILAN 461
Query: 322 RQKNQIYQLKLQSGESTTNMTEIVGEITNYFQQLFTEEPVVAPPIEIMNAYKV----LTD 377
+ KN I L++ N+T++ I Y+ L + + P + + D
Sbjct: 462 QAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCND 521
Query: 378 ENLGYISQIPTAEEIKSVVMEMGALKSPGPDGLPCIFYQHNWDVIGTELIHFIQAIFRSG 437
+S +P+ +EI + V M K+PGPD F+ +W V+ I ++ FR+G
Sbjct: 522 TLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTG 581
Query: 438 ELDPSLNVTTIALIPKVRNPIMASDFRPIALCNSIYKFIT 477
L N T I LIPKV S FRP++ C +YK IT
Sbjct: 582 HLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 131/556 (23%), Positives = 249/556 (44%), Gaps = 39/556 (7%)
Query: 760 TYPFSFQRVPKTVIARLEKEERCFWWGHEAEDHKMHFIKWSIISSPKKHGGLGIRSLFEV 819
TY + +PKTV ++ FWW ++ E MH+ W +S K GG+G + +
Sbjct: 5 TYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAF 64
Query: 820 NESLLAKMVWRFLTDQDAMWVILLKAKYLINEDFWSADIKPKHSSFWKSMLQVKEVIKDH 879
N +LL K +WR L+ +++ + K++Y D +A + + S WKS+ +E+++
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124
Query: 880 VIWQIGDNSNVEI-KDPWIPESTNYKPTIIRPLPP-------TITRVSDLINTNSNQWNQ 931
+G+ ++ I + W+ ++ +PP +I +VSDLI+ + +W +
Sbjct: 125 ARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 932 EMLQFYFDHETIEAINNLYIPNQQEKDTLIWTETQNGKFSSKSYYSLI-------KSRED 984
++++ F + I L ++ D+ W T +G ++ KS Y ++ S ++
Sbjct: 185 DVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQE 244
Query: 985 LPDYIINFPWTKFWKKTQMDPKIQLFIWRLIHKGLATLSNIGRRLSHVDPECKLCLLQEI 1044
+ + +N + K W K+Q PKIQ F+W+ + L + R + C C +
Sbjct: 245 VSEPSLNPIYQKIW-KSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK- 302
Query: 1045 ETHCHLFGSCINFQNLLAITN-DVDLLQLGSDPIQ-NLQELLNKGDSANGIWYKYS---- 1098
ET HL C + AI++ + L +D I NL + N G+ N W K S
Sbjct: 303 ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGN-GNPQWEKASQLVP 361
Query: 1099 YLLWIWWKNRNDYLFKNQSSDLNRIWWMTKVE-------LKRNPNLLLSFPSLDELQVDH 1151
+LLW WKNRN+ +F+ + + + + + E ++ + P ++
Sbjct: 362 WLLWRLWKNRNELVFRGREFNAQEV--LRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 1152 WRPPRVGYLKINVDGVYRV--EGASAAAVMRNSDGEMIASKSEVFAPI-SAIHSEMKSFA 1208
WRPP ++K N D + E V+RN GE+ + + S + +E+++
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479
Query: 1209 LGFQLVLEEDLYEVEIQGDSKVMVNLLKDASVDPPWRLTHEINHMRGLISE-RRVSISHC 1267
+ V + DS+V++ +L + + P L I ++ L+S+ V
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWP--SLKPTIQDLQRLLSQFTEVKFVFI 537
Query: 1268 NRNANSVPHNLAYATL 1283
R N++ +A +L
Sbjct: 538 PREGNTLAERVARESL 553
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 193/438 (44%), Gaps = 37/438 (8%)
Query: 634 ISHLLFADDLILFGEANQSNLNGIVLIMEEYAAFSGQAVNFDKSSIFFGKGVPAIIQDQY 693
I+HL FADDL++F + +S++ GI+ I ++A FSG ++ +KS+I+ GV +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 694 IHLLHAPRMSDQAKYLGSLIMKPGNKIETYTWLIDKFKKTLAGWKQGLTSQAGKTVLIKS 753
+H + +YLG ++ Y L++K + + W S AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 754 VLGSFCTYPFSFQRVPKTVIARLEKEERCFWWGHEAEDHKMHFIKWSIISSPKKHGGLGI 813
V+ S + S R+P I ++ F W + K + WS + +PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 814 RSLFEVNESLLAKMVWRFLTDQDAMWVILLKAKYLINEDFWSADIKPKHSSF-WKSMLQV 872
RSL E N+ L K++WR L+ ++WV L+ L FWS S+ WK +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 873 KEVIKDHVIWQIGDNSNVEIK-DPW-----IPESTNYKPTIIRPLPPTITRVSDLINTNS 926
+ + V I + SN D W + + T ++ I + + ++N
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 927 NQWNQEMLQFYFDHETIEAINNLYIPNQQE-----KDTLIWTETQNGK-----FSSKSYY 976
+ H+T+ I ++ + + +DT+ W NG F++K +
Sbjct: 306 RR---------HRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKETW 354
Query: 977 SLIKSREDLPDYIINFPWTKFWKKTQMDPKIQLFIWRLIHKGLATLSNIGRRLSHVDPEC 1036
+ +RE P +N W K + PK + W I L T + + D C
Sbjct: 355 A--ATRE--PKLKVN--WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSC 408
Query: 1037 KLCLLQEIETHCHLFGSC 1054
LC +ET HLF +C
Sbjct: 409 VLC-HHLVETRDHLFFTC 425
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 193/438 (44%), Gaps = 37/438 (8%)
Query: 634 ISHLLFADDLILFGEANQSNLNGIVLIMEEYAAFSGQAVNFDKSSIFFGKGVPAIIQDQY 693
I+HL FADDL++F + +S++ GI+ I ++A FSG ++ +KS+I+ GV +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 694 IHLLHAPRMSDQAKYLGSLIMKPGNKIETYTWLIDKFKKTLAGWKQGLTSQAGKTVLIKS 753
+H + +YLG ++ Y L++K + + W S AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 754 VLGSFCTYPFSFQRVPKTVIARLEKEERCFWWGHEAEDHKMHFIKWSIISSPKKHGGLGI 813
V+ S + S R+P I ++ F W + K + WS + +PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 814 RSLFEVNESLLAKMVWRFLTDQDAMWVILLKAKYLINEDFWSADIKPKHSSF-WKSMLQV 872
RSL E N+ L K++WR L+ ++WV L+ L FWS S+ WK +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 873 KEVIKDHVIWQIGDNSNVEIK-DPW-----IPESTNYKPTIIRPLPPTITRVSDLINTNS 926
+ + V I + SN D W + + T ++ I + + ++N
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 927 NQWNQEMLQFYFDHETIEAINNLYIPNQQE-----KDTLIWTETQNGK-----FSSKSYY 976
+ H+T+ I ++ + + +DT+ W NG F++K +
Sbjct: 306 RR---------HRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKETW 354
Query: 977 SLIKSREDLPDYIINFPWTKFWKKTQMDPKIQLFIWRLIHKGLATLSNIGRRLSHVDPEC 1036
+ +RE P +N W K + PK + W I L T + + D C
Sbjct: 355 A--ATRE--PKLKVN--WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSC 408
Query: 1037 KLCLLQEIETHCHLFGSC 1054
LC +ET HLF +C
Sbjct: 409 VLC-HHLVETRDHLFFTC 425
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 192/438 (43%), Gaps = 37/438 (8%)
Query: 634 ISHLLFADDLILFGEANQSNLNGIVLIMEEYAAFSGQAVNFDKSSIFFGKGVPAIIQDQY 693
I+HL FADDL++F + +S++ GI+ I ++A FSG ++ +KS+I+ GV +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 694 IHLLHAPRMSDQAKYLGSLIMKPGNKIETYTWLIDKFKKTLAGWKQGLTSQAGKTVLIKS 753
+H + +YLG ++ Y L++K + + W S AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 754 VLGSFCTYPFSFQRVPKTVIARLEKEERCFWWGHEAEDHKMHFIKWSIISSPKKHGGLGI 813
V+ S + S R+P I ++ F W + K + WS + +PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 814 RSLFEVNESLLAKMVWRFLTDQDAMWVILLKAKYLINEDFWSADIKPKHSS-FWKSMLQV 872
RSL E N+ L K++WR L+ ++WV L+ L FWS S WK +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 873 KEVIKDHVIWQIGDNSNVEI-KDPW-----IPESTNYKPTIIRPLPPTITRVSDLINTNS 926
+ + V I + SN D W + + T ++ I + + ++N
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 927 NQWNQEMLQFYFDHETIEAINNLYIPNQQE-----KDTLIWTETQNGK-----FSSKSYY 976
+ H+T+ I ++ + + +DT+ W NG F++K +
Sbjct: 306 RR---------HRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKETW 354
Query: 977 SLIKSREDLPDYIINFPWTKFWKKTQMDPKIQLFIWRLIHKGLATLSNIGRRLSHVDPEC 1036
+ +RE P +N W K + PK + W I L T + + D C
Sbjct: 355 A--ATRE--PKLKVN--WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSC 408
Query: 1037 KLCLLQEIETHCHLFGSC 1054
LC +ET HLF +C
Sbjct: 409 VLC-HHLVETRDHLFFTC 425