BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000011.1_g0020.1
(397 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36228.1 | nucleic acid binding / zinc ion binding protein | ... 66 1e-11
AT3G31430.1 | zinc knuckle (CCHC-type) family protein | Chr3:127... 62 2e-10
AT5G18636.1 | Ta11-like non-LTR retrotransposon | Chr5:6211268-6... 59 2e-09
AT5G25200.1 | Ta11-like non-LTR retrotransposon | Chr5:8716766-8... 58 6e-09
AT2G02103.1 | Ta11-like non-LTR retrotransposon | Chr2:530425-53... 58 7e-09
>AT5G36228.1 | nucleic acid binding / zinc ion binding protein |
Chr5:14271691-14272776 FORWARD LENGTH=361 | 201606
Length = 361
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 75 IKDNLFMIKFVTATEMEIAMESTPWVMQDELIVLQECNADIPPEEQIVDHVWFWVQLHGI 134
+ D F ++F + ++ + PWV + I LQ D P E+ + + WV + GI
Sbjct: 73 LDDRCFQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWE-DFPTED-FLTFIDVWVHIRGI 130
Query: 135 PPSLLNCTIVNRLASTMGTIIPTT-KEDANKWCIFGRIRVKLCITQAFQPRVNLKLSNNK 193
P ++ V +AST+G ++ E+ F R++V++ T+ + ++ ++ +
Sbjct: 131 PLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRE 190
Query: 194 LVSIEIRVEKLPRFCIYCGFIGHTMKFCPTIL 225
I EKL R C C + H + CP ++
Sbjct: 191 RAMIGFEYEKLQRVCTNCCRVNHQVSHCPYVV 222
>AT3G31430.1 | zinc knuckle (CCHC-type) family protein |
Chr3:12795861-12796871 REVERSE LENGTH=336 | 201606
Length = 336
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 80 FMIKFVTATEMEIAMESTPWVMQDELIVLQECNADIPPEEQIVDHVWFWVQLHGIPPSLL 139
F F +E + PW D +I+LQ IP + + FWVQ+ GIP L
Sbjct: 173 FHFIFTLEESLETVLRRGPWAFNDWMILLQRWEPQIP----LFPFIPFWVQIRGIPFQFL 228
Query: 140 NCTIVNRLASTMGTIIPTTKEDANKWCI----FGRIRVKLCITQAFQPRVNLKLSNNKLV 195
N +V + +G ++ T D N + F R+ + IT + + + + +
Sbjct: 229 NRGVVEHIGRALGQVLDT---DFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNT 285
Query: 196 SIEIRVEKLPRFCIYCGFIGHTMKFC 221
+ R E+L FC CG + H C
Sbjct: 286 LLRFRYERLRGFCEVCGMLTHDFGAC 311
>AT5G18636.1 | Ta11-like non-LTR retrotransposon |
Chr5:6211268-6212371 FORWARD LENGTH=367 | 201606
Length = 367
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 82 IKFVTATEMEIAM--ESTPWVMQDELIVLQECNADIPPEEQIVDHVWFWVQLHGIPPSLL 139
++FV A E+++ M PW+ + + + P +V + WVQ+ GIP +
Sbjct: 78 VQFVFANEIDLMMVQRREPWLFNNWFVAATRWQ--VAPAHNLVTTIDLWVQIRGIPLPYV 135
Query: 140 NCTIVNRLASTMGTIIPTTKEDANKWCI-FGRIRVKLCITQAFQPRVNLKLSNNKLVSIE 198
+ V +A +G II +A I F R+RV+ IT + + + + +I
Sbjct: 136 SEETVLEIAQDLGEIISLDFHEATSPQIAFIRVRVRFGITDRLRFFQRIIFDSGETATIR 195
Query: 199 IRVEKLPRFCIYCGFIGHTMKFCP 222
+ E+L R C C H +CP
Sbjct: 196 FQYERLRRLCSSCFRFTHNRAYCP 219
>AT5G25200.1 | Ta11-like non-LTR retrotransposon |
Chr5:8716766-8717869 REVERSE LENGTH=367 | 201606
Length = 367
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 82 IKFVTATEMEIAM--ESTPWVMQDELIVLQECNADIPPEEQIVDHVWFWVQLHGIPPSLL 139
++F+ A E+++ M PW+ + + + P +V + WVQ+ GIP +
Sbjct: 78 VQFLFANEIDLMMVQRREPWLFNNWFVA--ATRWQVAPAHNLVTTIDLWVQIRGIPLPYV 135
Query: 140 NCTIVNRLASTMGTIIPTTKEDANKWCI-FGRIRVKLCITQAFQPRVNLKLSNNKLVSIE 198
+ V +A +G II +A I F R+RV+ IT + + + + +I
Sbjct: 136 SEETVLEIAQDLGEIISLDFHEATSPQIAFIRVRVRFGITDRLRFFQRIIFDSGETATIR 195
Query: 199 IRVEKLPRFCIYCGFIGHTMKFCP 222
+ E+L R C C H +CP
Sbjct: 196 FQYERLRRLCSSCFRFTHNRAYCP 219
>AT2G02103.1 | Ta11-like non-LTR retrotransposon |
Chr2:530425-531636 REVERSE LENGTH=403 | 201606
Length = 403
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 82 IKFVTATEMEIAM--ESTPWVMQDELIVLQECNADIPPEEQIVDHVWFWVQLHGIPPSLL 139
++F+ A E+++ M PW+ + + + P +V + WVQ+ GIP +
Sbjct: 78 VQFLFANEIDLLMVQRREPWLFNNWFVAATRWQ--VAPAHNLVTTIDLWVQIRGIPLPYV 135
Query: 140 NCTIVNRLASTMGTIIPTTKEDANKWCI-FGRIRVKLCITQAFQPRVNLKLSNNKLVSIE 198
+ V +A +G II +A I F R+RV+ IT + + + + +I
Sbjct: 136 SEETVMEIAHDLGEIISLDFHEATSPQIAFIRVRVRFGITDRLRFFQRVIFDSGETATIR 195
Query: 199 IRVEKLPRFCIYCGFIGHTMKFCP 222
+ E+L R C C H +CP
Sbjct: 196 FQYERLRRLCSSCFRFTHNRAYCP 219