BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000011.1_g0030.1
(1139 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 174 1e-45
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 139 5e-34
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 139 5e-34
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 134 8e-32
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 115 3e-26
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 174 bits (441), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/517 (27%), Positives = 239/517 (46%), Gaps = 34/517 (6%)
Query: 610 AFCTYPCSFQVLPKKVVADLENIERDFWWNHSQQRTKMHFIRWDILTSPKHKGGLGIRSI 669
A TY + +LPK V + ++ DFWW + Q+ MH+ WD L+ K +GG+G + I
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 670 EEINLSLIAKMTWRFVTNPNSFWVKILKAKYLREDDFWNENNTTGSSHFWQAMAKTKNVI 729
E NL+L+ K WR ++ P S K+ K++Y + D N + S W+++ ++ ++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 730 RNNVLWIIGDGSSVKIRSDPWI-------PYIQHNTPTITVTLPSNIYWVSDLIDQHQNR 782
R ++G+G + I W+ P S+I VSDLID+
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 783 WKEELINNHFDVATTTAILNIQLPTYNQRDKLIWCPVDNGKFTTKSFY---TQIKNLPT- 838
W++++I F I ++ D W +G +T KS Y TQI N +
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 839 ---ISEQAIDIPWKLFWKQKEMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMCNT 895
+SE +++ ++ WK + PK+Q F+WK + + LP + R + C C +
Sbjct: 242 PQEVSEPSLNPIYQKIWKS-QTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 896 NQTETQHHLFGECPTFIDLA-TRAGINQHLQPDLNPITMLSKILINKEVDGN-EWLKVS- 952
+ ET +HL +C TF L + I L + ++ + +GN +W K S
Sbjct: 301 CK-ETVNHLLFKC-TFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ 358
Query: 953 ---YLLWEWWKMRNELHFQAKPPDPTRCVWKSMDQVRYLTDLNINDNSNSIVQVN----- 1004
+LLW WK RNEL F+ + + + ++ D + ++ + QVN
Sbjct: 359 LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCG 418
Query: 1005 RWIPPPIGKIKISFDGSYRDDQASCAA--IAKNSEEEI--IGSKAKMIIPKSPIFSELEG 1060
RW PPP +K + D ++ D C + +N + E+ +G++A + KS + +ELE
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKL-KSVLEAELEA 477
Query: 1061 FRCGMELATDLGLEEFILEGDARVLIDAILTVDEDIP 1097
R + + I E D++VLI+ IL DE P
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIE-ILNNDEIWP 513
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 215/473 (45%), Gaps = 29/473 (6%)
Query: 487 ITHLLFADDLIVFGKANEHNLNTIVQLMNQYSAFSGQKVNFSKSSLLFSKNVSQDIQDRF 546
ITHL FADDL+VF + ++ I+Q+ +++ FSG +++ KS++ + D D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKAD-I 66
Query: 547 VHLLEAPVMLDHEKYLGALILKKGNCIQSYTWLIEKFNNALSNWKNKYITQAGKTTLIKS 606
+H +YLG +L K Y L+EK + W ++++ AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 607 ILSAFCTYPCSFQVLPKKVVADLENIERDFWWNHSQQRTKMHFIRWDILTSPKHKGGLGI 666
++ + + S LP + ++++I F W+ + TK + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 667 RSIEEINLSLIAKMTWRFVTNPNSFWVKILKAKYLREDDFWN-ENNTTGSSHFWQAMAKT 725
RS++E N + K+ WR +++ S WV+ L+ LR+ FW+ NTT S W+ + K
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 726 KNVIRNNVLWIIGDGSSVKIRSDPW------IPYIQH-NTPTITVTLPSNIYWVSDLIDQ 778
+ + V I +GS+ D W I H + +TL ++ V++ +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHAS---VAEAVVN 302
Query: 779 HQNRWKEELINNHFDVATTTAILNIQLPTYNQRDKLIWCPVDNGKFTTKSFYTQIKNLPT 838
H+ R + + A + Q T + D + W NG F T+ +
Sbjct: 303 HRPR--RHRHDTLLRIEDVIAEVRHQGLTSGE-DTVRW--KGNGDIFKPCFNTK-ETWAA 356
Query: 839 ISEQAIDIPW-KLFWKQKEMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMCNTNQ 897
E + + W K W PK + W + + L + + D C +C+ +
Sbjct: 357 TREPKLKVNWYKGVWFS-HATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH-HL 414
Query: 898 TETQHHLFGECPTFIDL---ATRAGINQHLQPDLNPITMLSKILINKEVDGNE 947
ET+ HLF CP ++ TR ++QH N + K+L NK + G+E
Sbjct: 415 VETRDHLFFTCPYSAEVWSTLTRKLLSQHFT---NRWEAILKLLTNKSL-GHE 463
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 215/473 (45%), Gaps = 29/473 (6%)
Query: 487 ITHLLFADDLIVFGKANEHNLNTIVQLMNQYSAFSGQKVNFSKSSLLFSKNVSQDIQDRF 546
ITHL FADDL+VF + ++ I+Q+ +++ FSG +++ KS++ + D D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKAD-I 66
Query: 547 VHLLEAPVMLDHEKYLGALILKKGNCIQSYTWLIEKFNNALSNWKNKYITQAGKTTLIKS 606
+H +YLG +L K Y L+EK + W ++++ AG+ LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 607 ILSAFCTYPCSFQVLPKKVVADLENIERDFWWNHSQQRTKMHFIRWDILTSPKHKGGLGI 666
++ + + S LP + ++++I F W+ + TK + W + +PK +GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 667 RSIEEINLSLIAKMTWRFVTNPNSFWVKILKAKYLREDDFWN-ENNTTGSSHFWQAMAKT 725
RS++E N + K+ WR +++ S WV+ L+ LR+ FW+ NTT S W+ + K
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 726 KNVIRNNVLWIIGDGSSVKIRSDPW------IPYIQH-NTPTITVTLPSNIYWVSDLIDQ 778
+ + V I +GS+ D W I H + +TL ++ V++ +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHAS---VAEAVVN 302
Query: 779 HQNRWKEELINNHFDVATTTAILNIQLPTYNQRDKLIWCPVDNGKFTTKSFYTQIKNLPT 838
H+ R + + A + Q T + D + W NG F T+ +
Sbjct: 303 HRPR--RHRHDTLLRIEDVIAEVRHQGLTSGE-DTVRW--KGNGDIFKPCFNTK-ETWAA 356
Query: 839 ISEQAIDIPW-KLFWKQKEMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMCNTNQ 897
E + + W K W PK + W + + L + + D C +C+ +
Sbjct: 357 TREPKLKVNWYKGVWFS-HATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH-HL 414
Query: 898 TETQHHLFGECPTFIDL---ATRAGINQHLQPDLNPITMLSKILINKEVDGNE 947
ET+ HLF CP ++ TR ++QH N + K+L NK + G+E
Sbjct: 415 VETRDHLFFTCPYSAEVWSTLTRKLLSQHFT---NRWEAILKLLTNKSL-GHE 463
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 117/436 (26%), Positives = 199/436 (45%), Gaps = 30/436 (6%)
Query: 487 ITHLLFADDLIVFGKANEHNLNTIVQLMNQYSAFSGQKVNFSKSSLLFS---KNVSQDIQ 543
ITHL FADDL+VF + ++ I+Q+ +++ FSG +++ KS++ + N DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 544 DRFVHLLEA-PVMLDHEKYLGALILKKGNCIQSYTWLIEKFNNALSNWKNKYITQAGKTT 602
F A PV +YLG +L K Y L+EK + W ++++ AG+
Sbjct: 68 HSFPFASGALPV-----RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 603 LIKSILSAFCTYPCSFQVLPKKVVADLENIERDFWWNHSQQRTKMHFIRWDILTSPKHKG 662
LI S++ + + S LP + ++++I F W+ + TK + W + +PK +G
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 663 GLGIRSIEEINLSLIAKMTWRFVTNPNSFWVKILKAKYLREDDFWN-ENNTTGSSHFWQA 721
GLGIRS++E N + K+ WR +++ S WV+ L+ LR+ FW+ NTT S W+
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 722 MAKTKNVIRNNVLWIIGDGSSVKIRSDPW------IPYIQH-NTPTITVTLPSNIYWVSD 774
+ K + + V I +GS+ D W I H + +TL ++ V++
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHAS---VAE 298
Query: 775 LIDQHQNRWKEELINNHFDVATTTAILNIQLPTYNQRDKLIWCPVDNGKFTTKSFYTQIK 834
+ H+ R + + A + Q T + D + W NG F T+ +
Sbjct: 299 AVVNHRPRRHRH--DTLLRIEDVIAEVRHQGLTSGE-DTVRW--KGNGDIFKPCFNTK-E 352
Query: 835 NLPTISEQAIDIPW-KLFWKQKEMEPKVQLFIWKMVHDGLPSLANIGKRINHLDQRCKMC 893
E + + W K W PK + W + + L + + D C +C
Sbjct: 353 TWAATREPKLKVNWYKGVWFS-HATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 411
Query: 894 NTNQTETQHHLFGECP 909
+ + ET+ HLF CP
Sbjct: 412 H-HLVETRDHLFFTCP 426
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 151/343 (44%), Gaps = 23/343 (6%)
Query: 7 ERLDKVLSNASWLMQYPEA-GVFHLPRYNSDHAPILLKLITQGIPTTTLSKFEVY--WTH 63
+LD+ ++N W +P A VF L SDH+P ++ I + +P + F + +
Sbjct: 284 RKLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCII--ILENLPKRSKKCFRYFSFLST 340
Query: 64 HTDYTNVFQEKWATTIG------SFTSKTNDIKDSIKVWSKKAFGTIKNRLNILRKRLLD 117
H + W I S K K+ +++ FG I+++ L
Sbjct: 341 HPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLES 400
Query: 118 IQ---VLNPSTENLEIESKIQEDILHLENLQCTKAEQRAKSRWVHNGNRNTRAFHLAMSV 174
IQ + NPS +E ++ + Q+++ +W+ +G+ NTR FH +
Sbjct: 401 IQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILA 460
Query: 175 RRQKNKVHQLISEDGQTIRDFDNISNEFINHFQNLFSAEPVDQPPTEL-----MHAYKVF 229
+ KN + L +D + + + + ++ +L ++ P + +H ++
Sbjct: 461 NQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRC- 519
Query: 230 SPDQLAN-ISRVPNSKEIKSVVMNMGSIKSPGPDGLPCFFYQHNWDTIGTELIQYIQEAF 288
D LA+ +S +P+ KEI + V M K+PGPD F+ +W + I ++E F
Sbjct: 520 -NDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFF 578
Query: 289 ISGFIDPSINQTTIALIPKLKNPSMASHFRPITLCNTVYKFIT 331
+G + N T I LIPK+ S FRP++ C VYK IT
Sbjct: 579 RTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621