BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000012.1_g0010.1
         (75 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase...    54   3e-10
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase...    54   3e-10
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase...    54   3e-10

>AT3G24255.5 | RNA-directed DNA polymerase (reverse
          transcriptase)-related family protein |
          Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
          Length = 532

 Score = 54.3 bits (129), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 1  MVFFQGDSGSTQSLKGVLTGSHRATGLQANIHKSTIFFASLSAQGQSDITTILEFGTGYL 60
          +VF  G   S + +  +       +GLQ ++ KSTI+ A +    ++DI     F +G L
Sbjct: 18 LVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGAL 77

Query: 61 PVRYLGLPVISSRPT 75
          PVRYLGLP+++ + T
Sbjct: 78 PVRYLGLPLLTKKMT 92


>AT3G24255.4 | RNA-directed DNA polymerase (reverse
          transcriptase)-related family protein |
          Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
          Length = 532

 Score = 54.3 bits (129), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 1  MVFFQGDSGSTQSLKGVLTGSHRATGLQANIHKSTIFFASLSAQGQSDITTILEFGTGYL 60
          +VF  G   S + +  +       +GLQ ++ KSTI+ A +    ++DI     F +G L
Sbjct: 18 LVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGAL 77

Query: 61 PVRYLGLPVISSRPT 75
          PVRYLGLP+++ + T
Sbjct: 78 PVRYLGLPLLTKKMT 92


>AT3G24255.7 | RNA-directed DNA polymerase (reverse
          transcriptase)-related family protein |
          Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
          Length = 828

 Score = 54.3 bits (129), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 1  MVFFQGDSGSTQSLKGVLTGSHRATGLQANIHKSTIFFASLSAQGQSDITTILEFGTGYL 60
          +VF  G   S + +  +       +GLQ ++ KSTI+ A +    ++DI     F +G L
Sbjct: 18 LVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFASGAL 77

Query: 61 PVRYLGLPVISSRPT 75
          PVRYLGLP+++ + T
Sbjct: 78 PVRYLGLPLLTKKMT 92

Top