BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000012.1_g0020.1
(228 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD LEN... 45 3e-06
AT1G47370.1 | Toll-Interleukin-Resistance (TIR) domain family pr... 47 4e-06
>AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD
LENGTH=110 | 201606
Length = 110
Score = 45.4 bits (106), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 152 RTAAWWQQHKLMRSRTRKSKVTLWEKMEKYMRATFLPRNYTKLMYEKSQRLKQR 205
+ A+WWQQ + R R K+ + W+K+++ + TFLP +YT + + + +KQR
Sbjct: 1 QAASWWQQKQKTRKRAGKNPIKSWDKLKEKLCKTFLPPHYTSSVSNRLKNVKQR 54
>AT1G47370.1 | Toll-Interleukin-Resistance (TIR) domain family
protein | Chr1:17365898-17368703 REVERSE LENGTH=363 |
201606
Length = 363
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 135 GIPQDRQNPLVATRLCDRTAAWWQQHKLMRSRTRKSKVTLWEKMEKYMRATF 186
+P++R+ L AT+ C A WW Q K R+R K + WEK++K + T+
Sbjct: 306 ALPEERRVALEATKFCGHAAYWWNQTKTTRARIGKVLIHFWEKLKKKFKDTY 357