BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000012.1_g0040.1
(814 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 75 8e-14
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 64 1e-10
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 62 2e-10
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 57 2e-09
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 48 3e-06
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 13/188 (6%)
Query: 18 FITEKLDDSNYLMWRDQVETLLATYDLLGFVTGSIEEPPQLRIIQGIEQVNPDYQLWRSK 77
F+T L+ NY +WR+ ETL ++ +LG + GS P + W+ +
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE------------KRWKER 70
Query: 78 ESFVKSYLKSTLSKSVYYDTYGLK-TAKDMWDYLDLTNNEGLESKKDQLRRKLQTIKKGN 136
+ VK ++ T++ S+ + TA+D+W L+ + E++ Q +L+T +
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 137 VSIAEYLRELKQIADALIYVHDRISEPELVRLAIQGLGSDYDQFIIAIRANNEHLTLAHL 196
+S+ EY ++LK ++D L V IS+ LV + GL YD + I+ + +
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 197 KSRLIQHE 204
+S L+ E
Sbjct: 191 RSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 12 ISSVTSFITEKLD--DSNYLMWRDQVETLLATYDLLGFVTGSIEEPPQLRIIQGIEQVNP 69
+S++ S I LD +SNY WR+ T ++D++G + G++ + VN
Sbjct: 13 VSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-------LPTNANDVN- 64
Query: 70 DYQLWRSKESFVKSYLKSTLSKSVYYDTYGLK-TAKDMWDYLDLTNNEGLESKKDQLRRK 128
W+ ++ VK L TL+ + ++ T++D+W + +++ +L +
Sbjct: 65 ----WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSE 120
Query: 129 LQTIKKGNVSIAEYLRELKQIADALIYVHDRISEPELVRLAIQGLGSDYDQFIIAIR 185
L+T G++ +A+Y R++K++AD+L V +++ LV + GL +D I I+
Sbjct: 121 LRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIK 177
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 9 LPP-ISSVTSFITEKL--DDSNYLMWRDQVETLLATYDLLGFVTGSIEEPPQLRIIQGIE 65
LPP I + F +KL D+ NY+ W+ + + L GF+ G++ +P +
Sbjct: 20 LPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------D 70
Query: 66 QVNPDYQLWRSKESFVKSYLKSTLSKSVYYDTYGLKTAKDMWDYLDLTNNEGLESKKDQL 125
+P YQ W + V +L ++++ + +TA MW+ L ++ K QL
Sbjct: 71 PFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQL 130
Query: 126 RRKLQTIKKGNVSIAEYLRELKQI 149
RR+L T+++G S+ EY +L ++
Sbjct: 131 RRRLATLRQGGDSVEEYFGKLSKV 154
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 717 HRHITELGNTLSFHCSLPKSLWFDAFSTAVYVINRLPTKTLQGISPFETIFHVSPDYSNL 776
+R I E ++ C LPK+ DA +TAV++IN+ P+ + P E F P YS L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 777 KVFGCACYPHLGELRIDKLSPKS 799
+ FGC Y H E KL P++
Sbjct: 62 RRFGCVAYIHCDE---GKLKPRA 81
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 506 IKDIHSQKILAEGPIKNNLYPIEVHVPMLQNRTISANLAQTGT-TYETWHARLGHTHSGV 564
+K + + + +G ++LY ++ V T +NLA+T WH+RL H
Sbjct: 29 LKVLKGCRTILKGNRHDSLYILQGSV-----ETGESNLAETAKDETRLWHSRLAHMSQRG 83
Query: 565 IKQLSHENKIAISNKVENTFCQSCELGKSKCLPFESSSTTTTTPLYLIHCDIWGPAPI 622
++ L + + S FC+ C GK+ + F + TT PL +H D+WG +
Sbjct: 84 MELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141