BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000016.1_g0010.1
(567 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54920.1 | polyadenylate-binding protein interacting protein ... 101 2e-22
AT5G54920.2 | polyadenylate-binding protein interacting protein ... 101 2e-22
AT4G26990.1 | polyadenylate-binding protein interacting protein ... 97 3e-21
AT3G14010.3 | CTC-interacting domain 4 | Chr3:4637164-4640691 FO... 74 2e-13
AT3G14010.2 | CTC-interacting domain 4 | Chr3:4637164-4640691 FO... 74 2e-13
>AT5G54920.1 | polyadenylate-binding protein interacting protein |
Chr5:22302111-22305576 FORWARD LENGTH=517 | 201606
Length = 517
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 22 LSDALLFTTMSIIGLPVEVQVKDGSVYSGIFHTASIEKDYGIILKKARMIKKGKQDVKLN 81
L++ALL +TM IIGL V V + DGSV+SGIF+T S+E ++ I+LK A++ KKG+ +
Sbjct: 23 LNEALLISTMCIIGLQVHVHINDGSVFSGIFYTVSLENEFSIVLKNAKLTKKGRSKSNVE 82
Query: 82 NGSIIDTLVVQSKDLVQVIAKGVMLPAEGIGGNIVREDVEAA 123
+G I++TLV+ S ++VQ++A+GV L + + G I E+V +A
Sbjct: 83 SGKIVETLVILSSNIVQIVAEGVSL-SSNVAGEIEGENVVSA 123
>AT5G54920.2 | polyadenylate-binding protein interacting protein |
Chr5:22302111-22305576 FORWARD LENGTH=522 | 201606
Length = 522
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 22 LSDALLFTTMSIIGLPVEVQVKDGSVYSGIFHTASIEKDYGIILKKARMIKKGKQDVKLN 81
L++ALL +TM IIGL V V + DGSV+SGIF+T S+E ++ I+LK A++ KKG+ +
Sbjct: 23 LNEALLISTMCIIGLQVHVHINDGSVFSGIFYTVSLENEFSIVLKNAKLTKKGRSKSNVE 82
Query: 82 NGSIIDTLVVQSKDLVQVIAKGVMLPAEGIGGNIVREDVEAA 123
+G I++TLV+ S ++VQ++A+GV L + + G I E+V +A
Sbjct: 83 SGKIVETLVILSSNIVQIVAEGVSL-SSNVAGEIEGENVVSA 123
>AT4G26990.1 | polyadenylate-binding protein interacting protein |
Chr4:13551150-13554253 REVERSE LENGTH=474 | 201606
Length = 474
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 63/89 (70%)
Query: 26 LLFTTMSIIGLPVEVQVKDGSVYSGIFHTASIEKDYGIILKKARMIKKGKQDVKLNNGSI 85
L+ TM IIGL V V VKDGSV+SGIF TAS++ +GI+LK AR+ KKG + +GS+
Sbjct: 23 LIAATMCIIGLQVHVHVKDGSVFSGIFFTASVDNGFGIVLKDARITKKGTSISNVASGSV 82
Query: 86 IDTLVVQSKDLVQVIAKGVMLPAEGIGGN 114
+DTLV+ S +VQ+IA+GV LP+ N
Sbjct: 83 VDTLVILSSTIVQIIAEGVSLPSNVTTAN 111
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 110/243 (45%), Gaps = 39/243 (16%)
Query: 344 KEFKLNPGAKTFSPILVPRTAAPPAAAAATNTSMPYIQNRPTVVAVPNP-QPEPGVNTFT 402
KEFKLNP AK FSP R + P ++ YI + ++ VP PE N +
Sbjct: 250 KEFKLNPEAKIFSPSYTKRLSPSPVGMPHVG-NIAYIPSNTPMLPVPEAIYPEVVNNPYV 308
Query: 403 PQ---PIKIVHYNNMVALNDVTGSHYPPGSHYPQPIIGHVDSRLQHMDSRIQPVRYAGHY 459
PQ P K V Y N VT H G +PQ +IG +R QP RY Y
Sbjct: 309 PQAPPPSKFVPYGN------VTAGHAVGGFQFPQHMIGPT-------VNRAQPQRYTAQY 355
Query: 460 APLQAGPTYVHPNPQSVTGHRLGQLVYMHPVSHIIHH-----SKLIVAGIAAA------- 507
+QA P V+P+PQ + R GQLVY+ VS + S ++ + A
Sbjct: 356 HSVQAAPMLVNPSPQVMVA-RSGQLVYVQSVSQDLVQGTPPLSPMLSCPLPTAQHVQYLK 414
Query: 508 ---TLAAGQGIQVCATPPPPYMVNSGQQPFALPVHVP-LSQLQFPPGRPIPVPVPNSHFV 563
+AAGQ + +C + P G QP+ +P P + Q FP +P+ V VPN F
Sbjct: 415 HQGVVAAGQPLPLCVSLP---FTTGGPQPYGIPTQFPAMQQPPFPTNQPMTVAVPNG-FY 470
Query: 564 SKF 566
+KF
Sbjct: 471 TKF 473
>AT3G14010.3 | CTC-interacting domain 4 | Chr3:4637164-4640691
FORWARD LENGTH=595 | 201606
Length = 595
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 24 DALLFTTMSIIGLPVEVQVKDGSVYSGIFHTASIEKDYGIILKKARMIKKGKQDVKLNNG 83
D L++ T IG VEV +++GSVY+GIFH A++EKD+GIILK A +IK G +
Sbjct: 47 DRLVYFTTCKIGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRS 106
Query: 84 SII-----DTLVVQSKDLVQVIAKGV 104
+ T ++ + +LVQVIAK +
Sbjct: 107 EFVRKPPSKTFIIPADELVQVIAKDL 132
>AT3G14010.2 | CTC-interacting domain 4 | Chr3:4637164-4640691
FORWARD LENGTH=595 | 201606
Length = 595
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 24 DALLFTTMSIIGLPVEVQVKDGSVYSGIFHTASIEKDYGIILKKARMIKKGKQDVKLNNG 83
D L++ T IG VEV +++GSVY+GIFH A++EKD+GIILK A +IK G +
Sbjct: 47 DRLVYFTTCKIGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRS 106
Query: 84 SII-----DTLVVQSKDLVQVIAKGV 104
+ T ++ + +LVQVIAK +
Sbjct: 107 EFVRKPPSKTFIIPADELVQVIAKDL 132