BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000017.1_g0020.1
         (143 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    52   1e-08

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 52.0 bits (123), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 1   MNGVSNISIDKLVGN--NYSYWKLCMEAYLQGQDLWDLISGDEMVIPDDTPQNAELRRKW 58
           ++  S+ SI KL  +  NY  WK+   ++L+    +  I G    +P   P  + L + W
Sbjct: 24  IHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDG---TLPKPDP-FSPLYQPW 79

Query: 59  KIKCGKALFALRTSISKEYIEHVRDVKSPKQVWDTLERLFTQKNTMRLQYLENELAGMVQ 118
           +      ++ L  S++ + +E V   ++  ++W+ L R+F     +++  L   LA + Q
Sbjct: 80  EQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQ 139

Query: 119 SNMSIPEYFLKIKNVCAEISE 139
              S+ EYF K+  V  E+SE
Sbjct: 140 GGDSVEEYFGKLSKVWMELSE 160

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