BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000020.1_g0030.1
(1052 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 153 2e-37
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 153 2e-37
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 126 4e-33
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 83 2e-16
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 73 1e-13
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 23/204 (11%)
Query: 851 PSA-IANPAP---IHPMTTRSRTGVLRPRHLEDF-------VTYHSVCH--------PLP 891
PSA I N P +H R+R +P +L+D+ +T H + PL
Sbjct: 18 PSANIQNDVPEPSVHTSHRRTR----KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLY 73
Query: 892 QCFLALLEIPTDPTCFTQASKSPEWMQAMKDEIEALHHNNTWSLVPKQDSMNILGCKWVF 951
FL + +P+ + +A + W AM DEI A+ +TW + + +GCKWV+
Sbjct: 74 HSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVY 133
Query: 952 KTKLKSDGSIERYKARLVAKGFHQLDGLDYSETFSPVVKFSTIRVVLTIAVTNQWSIKQL 1011
K K SDG+IERYKARLVAKG+ Q +G+D+ ETFSPV K ++++++L I+ +++ QL
Sbjct: 134 KIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQL 193
Query: 1012 DVSNAFLHGVLDEDVFMVQPPGFA 1035
D+SNAFL+G LDE+++M PPG+A
Sbjct: 194 DISNAFLNGDLDEEIYMKLPPGYA 217
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 23/204 (11%)
Query: 851 PSA-IANPAP---IHPMTTRSRTGVLRPRHLEDF-------VTYHSVCH--------PLP 891
PSA I N P +H R+R +P +L+D+ +T H + PL
Sbjct: 18 PSANIQNDVPEPSVHTSHRRTR----KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLY 73
Query: 892 QCFLALLEIPTDPTCFTQASKSPEWMQAMKDEIEALHHNNTWSLVPKQDSMNILGCKWVF 951
FL + +P+ + +A + W AM DEI A+ +TW + + +GCKWV+
Sbjct: 74 HSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVY 133
Query: 952 KTKLKSDGSIERYKARLVAKGFHQLDGLDYSETFSPVVKFSTIRVVLTIAVTNQWSIKQL 1011
K K SDG+IERYKARLVAKG+ Q +G+D+ ETFSPV K ++++++L I+ +++ QL
Sbjct: 134 KIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQL 193
Query: 1012 DVSNAFLHGVLDEDVFMVQPPGFA 1035
D+SNAFL+G LDE+++M PPG+A
Sbjct: 194 DISNAFLNGDLDEEIYMKLPPGYA 217
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 126 bits (317), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 87/141 (61%), Gaps = 18/141 (12%)
Query: 863 MTTRSRTGV--LRPRHLEDFVTYHSVCHPLPQCFLALLEIPTDPTCFTQASKSPEWMQAM 920
M TRS+ G+ L P++ T I +P A K P W QAM
Sbjct: 1 MLTRSKAGINKLNPKYSLTITT----------------TIKKEPKSVIFALKDPGWCQAM 44
Query: 921 KDEIEALHHNNTWSLVPKQDSMNILGCKWVFKTKLKSDGSIERYKARLVAKGFHQLDGLD 980
++E++AL N TW LVP + NILGCKWVFKTKL SDG+++R KARLVAKGFHQ +G+
Sbjct: 45 QEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIY 104
Query: 981 YSETFSPVVKFSTIRVVLTIA 1001
+ ET+SPVV+ +TIR +L +A
Sbjct: 105 FVETYSPVVRTATIRTILNVA 125
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 1 MASSSSSSQPLTFNITN-----FISIKLDENNFLVWRDQFESILISNDLIGYVDGSISQP 55
MA ++ SS +F I F+++ L++ N+ VWR+ FE++ +S ++G++DGS
Sbjct: 1 MADTTLSSYEKSFGIMQIRAYIFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS---- 56
Query: 56 ETSIIDSEGREVINPAFQAWRKYDHYVKSCLKATFSDSISADVLGLP-TSHKIWSYLNEV 114
T +E R W++ D VK + T +DS+ ++ + T+ +W L +
Sbjct: 57 STPTPMTEKR---------WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENL 107
Query: 115 YAEEFEAKQDFLRRQIQNIQRGNASINDYLRRIKSLADSLASVNDKVSEKEMIRIILAGL 174
+ + EA+ +++ + S+++Y +++KSL+D L +V+ +S++ ++ +L GL
Sbjct: 108 FRDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGL 167
Query: 175 GKKFSQFVIAIDNRTDRIHLPELRSKLLHHE 205
+K+ + I +++ E RS LL E
Sbjct: 168 TEKYDYILNVIKHKSPFPSFTEARSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 14 NITNFISIKLD--ENNFLVWRDQFESILISNDLIGYVDGSISQPETSIIDSEGREVINPA 71
NI + I + LD E+N+ WR+ F + +S D++G++DG++ + ++
Sbjct: 15 NIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVN---------- 64
Query: 72 FQAWRKYDHYVKSCLKATFS-DSISADVLGLPTSHKIWSYLNEVYAEEFEAKQDFLRRQI 130
W+K D VK L T + + TS IW + + +A+ L ++
Sbjct: 65 ---WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSEL 121
Query: 131 QNIQRGNASINDYLRRIKSLADSLASVNDKVSEKEMIRIILAGLGKKFSQFVIAIDNR 188
+ G+ + DY R++K LADSL +V+ V+++ ++ +L GL KF + I +R
Sbjct: 122 RTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHR 179