BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000029.1_g0010.1
(223 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 79 1e-18
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 62 3e-11
AT1G65900.2 | plant/protein | Chr1:24516023-24518201 REVERSE LEN... 60 2e-10
AT1G65900.1 | plant/protein | Chr1:24516023-24518325 REVERSE LEN... 60 2e-10
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 79.0 bits (193), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 142 LLNGIPKGFFYSERGLRQGCPLSPYLFILCSETLTKLVVQAETDGLYCGLKLNRYAPSVN 201
++NG P+G RGLRQG PLSPYLFILC+E L+ L +A+ G G++++ +P +N
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 202 HLMFADD 208
HL+FADD
Sbjct: 73 HLLFADD 79
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 61 VQNAFVPGRQISDNIIVAREIFHSMANTSAADGYFVLKADMAKAYDRVDWKFLHDVLTRY 120
Q +F+PGR +DNI+ +E HSM G+ +LK D+ KAYDR+ W +L D L
Sbjct: 16 AQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISA 75
Query: 121 G 121
G
Sbjct: 76 G 76
>AT1G65900.2 | plant/protein | Chr1:24516023-24518201 REVERSE
LENGTH=363 | 201606
Length = 363
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1 TVDVVIDETYISHPLEYSLLTFLQNIKVDNENKDQFDFTFLEKQSLWRYDKRIQDSNSIE 60
TVD VIDET S P Y+ TFL NI VD D F FL QS+WRYDKR+++ +++
Sbjct: 244 TVDAVIDETLSSDPQNYTQTTFLANINVD----DNSCFAFLANQSIWRYDKRVRNRTTLD 299
>AT1G65900.1 | plant/protein | Chr1:24516023-24518325 REVERSE
LENGTH=408 | 201606
Length = 408
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 1 TVDVVIDETYISHPLEYSLLTFLQNIKVDNENKDQFDFTFLEKQSLWRYDKRIQDSNSIE 60
TVD VIDET S P Y+ TFL NI VD D F FL QS+WRYDKR+++ +++
Sbjct: 289 TVDAVIDETLSSDPQNYTQTTFLANINVD----DNSCFAFLANQSIWRYDKRVRNRTTLD 344