BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000033.1_g0130.1
(733 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 167 1e-43
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 134 4e-33
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 134 4e-33
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 131 2e-31
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 100 7e-22
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 167 bits (422), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 236/561 (42%), Gaps = 42/561 (7%)
Query: 205 LCVYPFSYQLLPQGVLNKLEREERAFWWGHGIQERKMHFINWDIITSSKKHGGLGIRSLK 264
L Y + LLP+ V ++ FWW + + + MH+ WD ++ K GG+G + ++
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 265 EVNESLIAKMAWRFLTNKQAIWVKLLRAKYLQKEDYWSVEMNSPASPFWKSLLQVRTTLQ 324
N +L+ K WR L+ +++ K+ +++Y K D + + S S WKS+ + L+
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILR 122
Query: 325 HNTIWMIGDGSDTRILEDRWIPEMRDHIPTLIQQLP-------QNITWVADLIDSNSKTW 377
++G+G D I +W+ +Q++P +I V+DLID + + W
Sbjct: 123 QGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREW 182
Query: 378 KIHLLQQFFTTESIIAITNITISITGERDRLIWKNTEQGRFTTKSYY---STIKFNPTLP 434
+ +++ F I + D W T G +T KS Y + I + P
Sbjct: 183 RKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSP 242
Query: 435 MEIGDFP----WSKFWKKKEMDPKVQLFIWRLIHNGIATISNMNHRPQQTNQNCKMCPED 490
E+ + + K W K + PK+Q F+W+ + N + + +R C CP
Sbjct: 243 QEVSEPSLNPIYQKIW-KSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP-S 300
Query: 491 AIESHTHLFGTCKTFK--TFILSLQDVDLQNLTEDPIQ-NLKDILNKGKDLNEFWYKYT- 546
E+ HL C TF T+ +S + L D I NL + N G N W K +
Sbjct: 301 CKETVNHLLFKC-TFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNG-NPQWEKASQ 358
Query: 547 ---YLLWHWWKARNEKHFQNQDFDLNRTWHKISLDLKRF------PSLSVFPSFSNILQD 597
+LLW WK RNE F+ ++F+ + DL+ + S P N
Sbjct: 359 LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQV-NRSSC 417
Query: 598 KAWNPPPQGRIKINVDGAFRRD--KAAAAAIAKDWRGETIDSEVHNFPPISS-LHSELRG 654
W PPP +K N D + RD + + ++ +GE P + S L +EL
Sbjct: 418 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEA 477
Query: 655 MELGFQVAERLGLNSFEMETDSLVLVNLITDGR---DASPWRLINDLDRLRGYLTGRDVV 711
M R N E+DS VL+ ++ + P I DL RL T +V
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLKP--TIQDLQRLLSQFT--EVK 533
Query: 712 IRHCPREANLAPHELAKSLMN 732
PRE N +A+ ++
Sbjct: 534 FVFIPREGNTLAERVARESLS 554
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 190/431 (44%), Gaps = 22/431 (5%)
Query: 81 ISHLLFADDLIIFGKATSTNLTAIIEFMEIYSSFSGQAVNYDKSSIYFSSGVTPDIKQQF 140
I+HL FADDL++F +++ I++ ++ FSG ++ +KS+IY + GV + K
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 141 VNTLKAPIMTDQAKYLGALILKPGNRIKSFDWLQDKFKKTLAGWKQKLVSQAGRTVLIKS 200
+++ +YLG +L + L +K + + W + +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 201 VLSPLCVYPFSYQLLPQGVLNKLEREERAFWWGHGIQERKMHFINWDIITSSKKHGGLGI 260
V+ L + S LP + +++ +F W K + W + + K GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 261 RSLKEVNESLIAKMAWRFLTNKQAIWVKLLRAKYLQKEDYWSVEMNSP-ASPFWKSLLQV 319
RSLKE N+ + K+ WR L++ ++WV+ LR L+K +WS+ N+ S WK +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 320 RTTLQHNTIWMIGDGSDTRILEDRW-----IPEMRDHIPTLIQQLPQNITWVADLIDSNS 374
R I +GS+T D W + ++ H + + + + +++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 375 KTWKIHLLQQFFTTESIIAITNITISITGERDRLIWKNTE---QGRFTTKSYYSTIKFNP 431
+ H E +IA +GE D + WK + F TK ++ + P
Sbjct: 306 RR---HRHDTLLRIEDVIAEVRHQGLTSGE-DTVRWKGNGDIFKPCFNTKETWAATR-EP 360
Query: 432 TLPMEIGDFPWSKFWKKKEMDPKVQLFIWRLIHNGIATISNMNHRPQQTNQNCKMCPEDA 491
L + W K PK + W I N + T M + +C +C
Sbjct: 361 KLKVN-----WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC-HHL 414
Query: 492 IESHTHLFGTC 502
+E+ HLF TC
Sbjct: 415 VETRDHLFFTC 425
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 190/431 (44%), Gaps = 22/431 (5%)
Query: 81 ISHLLFADDLIIFGKATSTNLTAIIEFMEIYSSFSGQAVNYDKSSIYFSSGVTPDIKQQF 140
I+HL FADDL++F +++ I++ ++ FSG ++ +KS+IY + GV + K
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 141 VNTLKAPIMTDQAKYLGALILKPGNRIKSFDWLQDKFKKTLAGWKQKLVSQAGRTVLIKS 200
+++ +YLG +L + L +K + + W + +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 201 VLSPLCVYPFSYQLLPQGVLNKLEREERAFWWGHGIQERKMHFINWDIITSSKKHGGLGI 260
V+ L + S LP + +++ +F W K + W + + K GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 261 RSLKEVNESLIAKMAWRFLTNKQAIWVKLLRAKYLQKEDYWSVEMNSP-ASPFWKSLLQV 319
RSLKE N+ + K+ WR L++ ++WV+ LR L+K +WS+ N+ S WK +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 320 RTTLQHNTIWMIGDGSDTRILEDRW-----IPEMRDHIPTLIQQLPQNITWVADLIDSNS 374
R I +GS+T D W + ++ H + + + + +++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 375 KTWKIHLLQQFFTTESIIAITNITISITGERDRLIWKNTE---QGRFTTKSYYSTIKFNP 431
+ H E +IA +GE D + WK + F TK ++ + P
Sbjct: 306 RR---HRHDTLLRIEDVIAEVRHQGLTSGE-DTVRWKGNGDIFKPCFNTKETWAATR-EP 360
Query: 432 TLPMEIGDFPWSKFWKKKEMDPKVQLFIWRLIHNGIATISNMNHRPQQTNQNCKMCPEDA 491
L + W K PK + W I N + T M + +C +C
Sbjct: 361 KLKVN-----WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC-HHL 414
Query: 492 IESHTHLFGTC 502
+E+ HLF TC
Sbjct: 415 VETRDHLFFTC 425
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 190/431 (44%), Gaps = 22/431 (5%)
Query: 81 ISHLLFADDLIIFGKATSTNLTAIIEFMEIYSSFSGQAVNYDKSSIYFSSGVTPDIKQQF 140
I+HL FADDL++F +++ I++ ++ FSG ++ +KS+IY + GV + K
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 141 VNTLKAPIMTDQAKYLGALILKPGNRIKSFDWLQDKFKKTLAGWKQKLVSQAGRTVLIKS 200
+++ +YLG +L + L +K + + W + +S AGR LI S
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 201 VLSPLCVYPFSYQLLPQGVLNKLEREERAFWWGHGIQERKMHFINWDIITSSKKHGGLGI 260
V+ L + S LP + +++ +F W K + W + + K GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 261 RSLKEVNESLIAKMAWRFLTNKQAIWVKLLRAKYLQKEDYWSVEMNSP-ASPFWKSLLQV 319
RSLKE N+ + K+ WR L++ ++WV+ LR L+K +WS+ N+ S WK +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 320 RTTLQHNTIWMIGDGSDTRILEDRW-----IPEMRDHIPTLIQQLPQNITWVADLIDSNS 374
R I +GS+T D W + ++ H + + + + +++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 375 KTWKIHLLQQFFTTESIIAITNITISITGERDRLIWKNTE---QGRFTTKSYYSTIKFNP 431
+ H E +IA +GE D + WK + F TK ++ + P
Sbjct: 306 RR---HRHDTLLRIEDVIAEVRHQGLTSGE-DTVRWKGNGDIFKPCFNTKETWAATR-EP 360
Query: 432 TLPMEIGDFPWSKFWKKKEMDPKVQLFIWRLIHNGIATISNMNHRPQQTNQNCKMCPEDA 491
L + W K PK + W I N + T M + +C +C
Sbjct: 361 KLKVN-----WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC-HHL 414
Query: 492 IESHTHLFGTC 502
+E+ HLF TC
Sbjct: 415 VETRDHLFFTC 425
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 159/382 (41%), Gaps = 21/382 (5%)
Query: 130 SGVTPDIKQQFVNTLKAPIMTDQAKYLGALILKPGNRIKSFDWLQDKFKKTLAGWKQKLV 189
+GV + K +++ +YLG +L + L +K + + W + +
Sbjct: 2 AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHL 61
Query: 190 SQAGRTVLIKSVLSPLCVYPFSYQLLPQGVLNKLEREERAFWWGHGIQERKMHFINWDII 249
S AGR LI SV+ L + S LP + +++ +F W K + W +
Sbjct: 62 SFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDV 121
Query: 250 TSSKKHGGLGIRSLKEVNESLIAKMAWRFLTNKQAIWVKLLRAKYLQKEDYWSVEMNSP- 308
+ K GGLGIRSLKE N+ + K+ WR L++ ++WV+ LR L+K +WS+ N+
Sbjct: 122 CTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTL 180
Query: 309 ASPFWKSLLQVRTTLQHNTIWMIGDGSDTRILEDRW-----IPEMRDHIPTLIQQLPQNI 363
S WK +L+ R I +GS+T D W + ++ H + + +
Sbjct: 181 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHA 240
Query: 364 TWVADLIDSNSKTWKIHLLQQFFTTESIIAITNITISITGERDRLIWKNTE---QGRFTT 420
+ +++ + H E +IA +GE D + WK + F T
Sbjct: 241 SVAEAVVNHRPRR---HRHDTLLRIEDVIAEVRHQGLTSGE-DTVRWKGNGDIFKPCFNT 296
Query: 421 KSYYSTIKFNPTLPMEIGDFPWSKFWKKKEMDPKVQLFIWRLIHNGIATISNMNHRPQQT 480
K ++ + P L + W K PK + W I N + T M
Sbjct: 297 KETWAATR-EPKLKVN-----WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGA 350
Query: 481 NQNCKMCPEDAIESHTHLFGTC 502
+ +C +C +E+ HLF TC
Sbjct: 351 DSSCVLC-HHLVETRDHLFFTC 371