BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000033.1_g0330.1
         (243 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48720.1 | Copia-like polyprotein/retrotransposon | Chr1:1801...    82   5e-20
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C...    57   2e-09

>AT1G48720.1 | Copia-like polyprotein/retrotransposon |
          Chr1:18018148-18018441 FORWARD LENGTH=97 | 201606
          Length = 97

 Score = 82.4 bits (202), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 1  MSVLLGSHDLWDIVQNGYVEPTLEEEDIMNDLQKNVLKDSRKNDKKVLFLIYQGIDSSTF 60
          M  +LG+HD+W+IV+ G++EP  E E  ++  QK+ L+DSRK DKK L LIYQG+D  TF
Sbjct: 25 MKAILGAHDVWEIVEKGFIEP--ENEGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTF 82

Query: 61 EKVSEAKSSK 70
          EKV EA S+K
Sbjct: 83 EKVVEATSAK 92


>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)

Query: 10  LWDIVQNGYVEPTLEEEDIMNDLQKNVLKDSRK---NDKKVLFLIYQGIDSSTFEKVSEA 66
           LWD+V NG  +   +  ++   +Q   L   R     D K L ++   +  S F K   A
Sbjct: 33  LWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQILQSSLTDSVFRKTLSA 92

Query: 67  KSSKKAWNILK--NSFRGVDKVVKVCLQILHGEFERLSMNEGELVSDYVSRVLSYVNEIK 124
            S+K  W++L+  N    + ++ +V ++ L  + E L M + E  S Y+ + L  +  + 
Sbjct: 93  SSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKESGSSYLDKALEILERLG 152

Query: 125 RCGEKCDDVRVMEKILRSLTPKFDNVIIVIEESKDLKSMTVDELMGTL--QIHE 176
           R   +  D  + + +  +L+  FD +  ++EE  D+  MT   L+     ++HE
Sbjct: 153 RAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKSLVEYFYYRVHE 206

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