BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000033.1_g0340.1
(290 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G28070.1 | ATP-dependent RNA helicase | Chr1:9783082-9783864 ... 74 9e-16
AT2G33510.1 | ATP-dependent RNA helicase | Chr2:14194195-1419547... 74 1e-15
AT2G33510.2 | ATP-dependent RNA helicase | Chr2:14194195-1419547... 74 2e-15
AT5G53670.1 | transmembrane protein | Chr5:21796997-21797731 FOR... 47 6e-06
AT3G11600.1 | E3 ubiquitin-protein ligase | Chr3:3667337-3667690... 43 3e-05
>AT1G28070.1 | ATP-dependent RNA helicase | Chr1:9783082-9783864
FORWARD LENGTH=176 | 201606
Length = 176
Score = 73.9 bits (180), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 25/129 (19%)
Query: 163 QAVEVKATAGEIYYVNWVNGMEVRGEDPRNNNYTQVKEEEEDSYHDSEESSTSDSSSYPS 222
Q +++K GEIYY +W +GM V+ EDPR K +Y D +S +
Sbjct: 56 QCLDLKT--GEIYYRSWNSGMRVK-EDPR-------KSMSRGNYADQSSGESSGTVFSSE 105
Query: 223 SSSSTTTDTSCC---------YHRDRGDDDNYYHDDVLVVAGCKSCLMYFMLPKGVQECP 273
SS YH++ D+D VLVVAGCK+CLMYFM+PK ++CP
Sbjct: 106 EVSSYYESEESSSESSPSSRKYHKEEQDED------VLVVAGCKACLMYFMVPKLFKDCP 159
Query: 274 KCTTFLLHF 282
KC T LLHF
Sbjct: 160 KCATQLLHF 168
>AT2G33510.1 | ATP-dependent RNA helicase | Chr2:14194195-14195473
FORWARD LENGTH=189 | 201606
Length = 189
Score = 74.3 bits (181), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 163 QAVEVKATAGEIYYVNWVNGMEVRGEDPRNNNYTQVKEEEEDSYHDSEESSTSDSSSYPS 222
Q +++K GEIYY+NW NGM V+ EDPR + DSY +
Sbjct: 65 QCLDLKT--GEIYYINWKNGMRVK-EDPRK--VMNADPDSGDSY-----GTVCSEEDSSY 114
Query: 223 SSSSTTTDTSCCYHRDR-------GDDDNYYHDDVLVVAGCKSCLMYFMLPKGVQECPKC 275
S ++ S R+ +++ +DVLVVAGCK+C MYFM+PK V++CPKC
Sbjct: 115 YDSEESSSESSPSSRENHKEEEEEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKC 174
Query: 276 TTFLLHFHHPTTS 288
LLHF P ++
Sbjct: 175 AAQLLHFDRPHSA 187
>AT2G33510.2 | ATP-dependent RNA helicase | Chr2:14194195-14195473
FORWARD LENGTH=204 | 201606
Length = 204
Score = 73.9 bits (180), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 171 AGEIYYVNWVNGMEVRGEDPRNNNYTQVKEEEEDSYHDSEESSTSDSSSYPSSSSSTTTD 230
GEIYY+NW NGM V+ EDPR + DSY + S ++
Sbjct: 86 TGEIYYINWKNGMRVK-EDPRK--VMNADPDSGDSY-----GTVCSEEDSSYYDSEESSS 137
Query: 231 TSCCYHRDR-------GDDDNYYHDDVLVVAGCKSCLMYFMLPKGVQECPKCTTFLLHFH 283
S R+ +++ +DVLVVAGCK+C MYFM+PK V++CPKC LLHF
Sbjct: 138 ESSPSSRENHKEEEEEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCAAQLLHFD 197
Query: 284 HP 285
P
Sbjct: 198 RP 199
>AT5G53670.1 | transmembrane protein | Chr5:21796997-21797731
FORWARD LENGTH=244 | 201606
Length = 244
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 1 MRYKGKGNIREYIMKMSHIASKLKALKLE--LSEDLLM-HLVMNSLPAQFGQFKVSYNCQ 57
M Y N+RE IM+M + +K K L + S D+++ H + LP Q+ K Y+C
Sbjct: 139 MSYIENENVRELIMRMKTLGAKRKRLGINNIFSNDMMLAHCAVKMLPLQYISLKNVYSCL 198
Query: 58 K-------------EKWTLNELISNCVQEEERVKHENSESAH 86
+ E W+ ELIS C EEE ++ E ++ A
Sbjct: 199 EGKFVNENGRWHTGEIWSTKELISRCDMEEETLRTEIADEAR 240
>AT3G11600.1 | E3 ubiquitin-protein ligase | Chr3:3667337-3667690
FORWARD LENGTH=117 | 201606
Length = 117
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 212 SSTSDSSSYPSSSSSTTTDTSCCYHRDRGDDDNYYHDDVLVVAGCKSCLMYFMLPKGVQE 271
S S S S + S TT S C + ++N +V+ GC CLMY ML +
Sbjct: 22 SQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETITS-MVLVGCPRCLMYVMLSDDDPK 80
Query: 272 CPKC-TTFLLHFHH 284
CPKC +T LL F
Sbjct: 81 CPKCKSTVLLDFLQ 94