BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000033.1_g0350.1
(860 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 85 4e-17
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 73 3e-15
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 78 3e-14
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 78 3e-14
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 65 6e-12
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 40/353 (11%)
Query: 1 LVENGIPAAAE-----GVVLTDAERKNIEDQKLKDLKAKNYLFQALDRSILETILNKDTS 55
+V NG+P + E D +KD KA L +L S+ L+ ++
Sbjct: 36 VVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQILQSSLTDSVFRKTLSASSA 95
Query: 56 KNIWDSLKQKYQGST--RVKRAHLQALRKEFEVLHMKTGESVNEYFARTLNIANKMKANG 113
K++WD L++ + +T R+++ ++ L K+ E L M ES + Y + L I ++
Sbjct: 96 KDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKESGSSYLDKALEILERLGRAK 155
Query: 114 ENKGDVVVVEKILRSMTPKFDYVVCSIEESKDTNTLTIDELQSSLL--VHEQRMSSHVEE 171
K D + + + +++ FD + +EE D + +T L VHE S EE
Sbjct: 156 LEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKSLVEYFYYRVHE----SSTEE 211
Query: 172 EHALKITHWEQSGGRGRGRGSFRGRGRGRSRQSFDKAIVECYNCHKLGHFQWECPRK--- 228
+ G + +S K+ C C+K H Q +C +
Sbjct: 212 --------------------AIFGLLKDLRLKS--KSEKWCGLCYKNNHNQEDCKFRIHT 249
Query: 229 EKEANYAETQEEMLLMAYVDMN-KPIREDIWFLDSGCSIHMCGKKEYFSDFDGSFRDSVK 287
+KE E + L ++ K +DIW + I+M +YF+ D +F+ +V
Sbjct: 250 DKEEKEDEIVVDYRLETVPNLGAKTYDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVG 309
Query: 288 LGNNSSMVVTGKGNVRLQVN-GITHIITGVFYVPELKNNLLSIGQLQEKGLTI 339
+ + ++V GKG+V++++ G I V +VP L N+LS G++ K +I
Sbjct: 310 TVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMVSKRYSI 362
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 73.2 bits (178), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 559 NRTIMNMVRSMISEKKIPKTFWPEAVNWTVHVLNRSPTLAVKNKTPEEAWSGVKPSVEHF 618
NRTI+ VRSM+ E +PKTF +A N VH++N+ P+ A+ P+E W P+ +
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 619 RVFGCISHVH 628
R FGC++++H
Sbjct: 62 RRFGCVAYIH 71
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 745 RNRRPPVWMRDY----------------ATGEGLSEEENESLLAMFAATDPIHFEDALKS 788
R R P +++DY + E +S + L+ + A +P + +A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEF 95
Query: 789 EKWRQAMDLEMEAINKNDTWELMELPEGGKKVGLKWIYKTKFNENGEVDKYKVRLVAKGS 848
W AMD E+ A+ TWE+ LP K +G KW+YK K+N +G +++YK RLVAKG
Sbjct: 96 LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155
Query: 849 PLALGRDML-TFS 860
G D + TFS
Sbjct: 156 TQQEGIDFIETFS 168
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 745 RNRRPPVWMRDY----------------ATGEGLSEEENESLLAMFAATDPIHFEDALKS 788
R R P +++DY + E +S + L+ + A +P + +A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEF 95
Query: 789 EKWRQAMDLEMEAINKNDTWELMELPEGGKKVGLKWIYKTKFNENGEVDKYKVRLVAKGS 848
W AMD E+ A+ TWE+ LP K +G KW+YK K+N +G +++YK RLVAKG
Sbjct: 96 LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155
Query: 849 PLALGRDML-TFS 860
G D + TFS
Sbjct: 156 TQQEGIDFIETFS 168
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 785 ALKSEKWRQAMDLEMEAINKNDTWELMELPEGGKKVGLKWIYKTKFNENGEVDKYKVRLV 844
ALK W QAM E++A+++N TW L+ P +G KW++KTK + +G +D+ K RLV
Sbjct: 34 ALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLV 93
Query: 845 AKG 847
AKG
Sbjct: 94 AKG 96