BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000033.1_g0380.1
(135 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33520.1 | cysteine-rich/transmembrane domain protein A | Chr... 40 7e-05
>AT2G33520.1 | cysteine-rich/transmembrane domain protein A |
Chr2:14196876-14197514 FORWARD LENGTH=97 | 201606
Length = 97
Score = 40.0 bits (92), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 102 HCHHHDDQPAGCTSFLQGCLAALCCCCLMDECCF 135
H ++ D + GC FL+ CL LCCC +++CCF
Sbjct: 60 HEYYGDGEYVGCFPFLRSCLTTLCCCWFVEQCCF 93