BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000033.1_g0600.1
(158 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33730.1 | P-loop containing nucleoside triphosphate hydrolas... 234 1e-73
AT1G28180.1 | DEAD-box ATP-dependent RNA helicase-like protein |... 181 1e-56
AT4G33370.1 | DEA(D/H)-box RNA helicase family protein | Chr4:16... 120 3e-32
AT5G51280.1 | DEAD-box protein abstrakt | Chr5:20841456-20843645... 118 2e-31
AT3G58510.3 | DEA(D/H)-box RNA helicase family protein | Chr3:21... 115 2e-30
>AT2G33730.1 | P-loop containing nucleoside triphosphate hydrolases
superfamily protein | Chr2:14265679-14267880 REVERSE
LENGTH=733 | 201606
Length = 733
Score = 234 bits (596), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 120/136 (88%)
Query: 1 LDKNGYRVTSLHGGKSQKQHEISLEGFRTKRFNVLVATDVTARWTDIPDVAHVINYDMSG 60
LDK GYRVT+LHGGKSQ+Q EISLEGFR KR+NVLVATDV R DIPDVAHVINYDM
Sbjct: 596 LDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPK 655
Query: 61 NIETYTHHIGRTGRAGKTGVATTFLTVHDSEVFYDLKQMLTQSNSRVPPELARHEASKFK 120
+IE YTH IGRTGRAGK+GVAT+FLT+HD+EVFYDLKQML QSNS VPPELARHEAS+FK
Sbjct: 656 HIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFK 715
Query: 121 PGTVPDRPARRNDMVY 136
PGTVPDRP R +D VY
Sbjct: 716 PGTVPDRPPRHSDTVY 731
>AT1G28180.1 | DEAD-box ATP-dependent RNA helicase-like protein |
Chr1:9843084-9844241 REVERSE LENGTH=368 | 201606
Length = 368
Score = 181 bits (460), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 100/128 (78%), Gaps = 1/128 (0%)
Query: 1 LDKNG-YRVTSLHGGKSQKQHEISLEGFRTKRFNVLVATDVTARWTDIPDVAHVINYDMS 59
L+K G RVT+LH GKSQ+Q + SLE F+ KRFNVLV TDV R DI D+A VINYDM
Sbjct: 237 LEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMP 296
Query: 60 GNIETYTHHIGRTGRAGKTGVATTFLTVHDSEVFYDLKQMLTQSNSRVPPELARHEASKF 119
++ YTH IGRTGRAGKTGVATTFLT+ D +VFY LKQ L + NS VPPELARHEASKF
Sbjct: 297 NTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLKQKLNECNSLVPPELARHEASKF 356
Query: 120 KPGTVPDR 127
KPGT PDR
Sbjct: 357 KPGTFPDR 364
>AT4G33370.1 | DEA(D/H)-box RNA helicase family protein |
Chr4:16069669-16071405 REVERSE LENGTH=542 | 201606
Length = 542
Score = 120 bits (301), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 4 NGYRVTSLHGGKSQKQHEISLEGFRTKRFNVLVATDVTARWTDIPDVAHVINYDMSGNIE 63
G ++HGGK Q+ + ++ F+ + +VLVATDV ++ D PD+ HVINYDM G IE
Sbjct: 371 KGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIE 430
Query: 64 TYTHHIGRTGRAGKTGVATTFLTVHDSEV-FYDLKQMLTQSNSRVPPELAR 113
Y H IGRTGR GKTG+ATTF+ + SE+ DLK +L ++ R+PP LA
Sbjct: 431 NYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAE 481
>AT5G51280.1 | DEAD-box protein abstrakt | Chr5:20841456-20843645
FORWARD LENGTH=591 | 201606
Length = 591
Score = 118 bits (296), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/109 (49%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 5 GYRVTSLHGGKSQKQHEISLEGFRTKRFNVLVATDVTARWTDIPDVAHVINYDMSGNIET 64
G ++HGGK Q+ E ++ F+ + +VLVATDV ++ D PD+ HVINYDM IE
Sbjct: 421 GVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIEN 480
Query: 65 YTHHIGRTGRAGKTGVATTFLTVHDSE-VFYDLKQMLTQSNSRVPPELA 112
Y H IGRTGR GKTG+ATTF+ + SE DLK +L ++ R+PP LA
Sbjct: 481 YVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 529
>AT3G58510.3 | DEA(D/H)-box RNA helicase family protein |
Chr3:21640608-21643464 FORWARD LENGTH=612 | 201606
Length = 612
Score = 115 bits (289), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 79/114 (69%)
Query: 1 LDKNGYRVTSLHGGKSQKQHEISLEGFRTKRFNVLVATDVTARWTDIPDVAHVINYDMSG 60
L N + TS+HG ++Q++ E++L F+T R +LVATDV AR DIP VAHV+N+D+
Sbjct: 428 LCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPN 487
Query: 61 NIETYTHHIGRTGRAGKTGVATTFLTVHDSEVFYDLKQMLTQSNSRVPPELARH 114
+I+ Y H IGRTGRAGK+G+AT F +++++ L +++ ++N VP L R+
Sbjct: 488 DIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRY 541