BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000033.1_g0630.1
         (174 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD LEN...    43   1e-05

>AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD
           LENGTH=110 | 201606
          Length = 110

 Score = 42.7 bits (99), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 22  AADWWDQLQLLRMRKGKALNRSWSSMKMNLKEWFLPPNYQQHLLRIYQNCRQGLRSVGEY 81
           AA WW Q Q  R R GK   +SW  +K  L + FLPP+Y   +    +N +Q       +
Sbjct: 2   AASWWQQKQKTRKRAGKNPIKSWDKLKEKLCKTFLPPHYTSSVSNRLKNVKQR----AGF 57

Query: 82  YEEFSKLAQRNSTENFTEP----------DNVFIDR 107
            ++F++    +   NF E           DN F+D+
Sbjct: 58  GDDFTRNCHVH-VNNFVEKPTYDRDCYVQDNDFVDK 92


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