BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0090.1
(759 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 184 1e-49
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 132 3e-32
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 132 3e-32
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 128 4e-30
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 112 5e-26
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 184 bits (467), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 149/557 (26%), Positives = 251/557 (45%), Gaps = 53/557 (9%)
Query: 223 AVPRYQMQCFAIPKGVSKRIMTLQKSFWW---GKSRGICTKAWSSICLPKALGGLGIHLP 279
A+P Y M CF +PK V K+I+++ FWW +++G+ KAW + KA GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 280 ELDNKAMLCKLAWRVKAEPNALWVRFLKAKYFPHKESP--GPVKPNYSWTWNTIRKHMDL 337
E N A+L K WR+ + P +L + K++YF HK P P+ S+ W +I ++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 338 IEDFLTWEVHNGNKINIWKDNWIPDINT----------PLNLQNETNITKVAQLIQNN-- 385
+ V NG I IW+ W+ P + ++I KV+ LI +
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 386 EWNEEVLSRIFDPQAQNLIKAI-PIDSEGEDQRKWTLNKSGRFTVNSMYKYLSTSMN--- 441
EW ++V+ +F + LI + P D W SG +TV S Y L+ +N
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 442 -----SPPLHNPNWKFIWKLPTIPRIQTFIWKICTQTLPVRKRIG-KFIDGNTNCPNCAE 495
S P NP ++ IWK T P+IQ F+WK + +LPV + + + + C C
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 496 I-ESIEHALLHCPLAKNIWFYFNIISENISNVAD-------WIFSWENTTPLNDHEIQNL 547
E++ H L C A+ W +I AD W+F+ N P + Q L
Sbjct: 301 CKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ-L 359
Query: 548 LATILWIIWKIRCDHCFQHEINDLTHIIK---------MIQNFPRNDNIKLNKNKPEESK 598
+ +LW +WK R + F+ + +++ I+ + K N+ +
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 599 WTPPKRGWLKINVDASYMNIHEITGTSLIIHD--SDAKFIEAHTSIVRSRTSEEGEAIAI 656
W PP W+K N DA++ +E G ++ + + K++ A ++ + ++ E E A+
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGAR-ALPKLKSVLEAELEAM 478
Query: 657 LKGLLWAVEHNYNLINIESDNLNIIQNIKNSKNGIQWQSC-IHIQKIHEIKRKLDRVSFT 715
+L YN + ESD+ +I+ + N + W S IQ + + + V F
Sbjct: 479 RWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQFTEVKFV 535
Query: 716 FSCRSSNAAADKLAKRA 732
F R N A+++A+ +
Sbjct: 536 FIPREGNTLAERVARES 552
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 132 bits (332), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 197/448 (43%), Gaps = 31/448 (6%)
Query: 100 IAHLLFADDCIIFGRNSIDNIYILKNILRIFCESTGQIINYTKSNIFYSKNSHPKFKRLI 159
I HL FADD ++F +I + I F + +G I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 160 MRLLKVRNASTSEKYMGAQLFIGANKTNAFKDILQQIQKKLESWNHSFLSQAGRTIVAAT 219
+ + + +Y+G L T+ + ++++I+ ++ W LS AGR + ++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IVAAVPRYQMQCFAIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKALGGLGI 276
++ ++ + M F +P K I ++ SF W K AWS +C PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 277 HLPELDNKAMLCKLAWRVKAEPNALWVRFLKAKYFPHKESPGPVKPNY---SWTWNTIRK 333
+ NK L KL WR+ + +LWV++L+ Y K S + N SW W I K
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRL-YLLRKGSFWSISGNTTLGSWMWKKILK 244
Query: 334 HMDLIEDFLTWEVHNGNKINIWKDNWIPDINTPLNLQN-----ETNIT---KVAQLIQNN 385
H L F+ ++HNG+ + W DNW I +++ + IT VA+ + N+
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 386 ---EWNEEVLSRIFDPQAQNLIKAIPIDSEGEDQRKWTLNKS-GRFTVNSMYKYLSTSMN 441
+ L RI D A+ + + + GED +W N + N+ + +T
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGL---TSGEDTVRWKGNGDIFKPCFNTKETWAAT--R 358
Query: 442 SPPLHNPNWKFIWKLPTIPRIQTFIWKICTQTLPVRKRIGKFIDG-NTNCPNCAE-IESI 499
P L +K +W P+ W L R+ + G +++C C +E+
Sbjct: 359 EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETR 418
Query: 500 EHALLHCPLAKNIWFYFN--IISENISN 525
+H CP + +W ++S++ +N
Sbjct: 419 DHLFFTCPYSAEVWSTLTRKLLSQHFTN 446
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 132 bits (332), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 197/448 (43%), Gaps = 31/448 (6%)
Query: 100 IAHLLFADDCIIFGRNSIDNIYILKNILRIFCESTGQIINYTKSNIFYSKNSHPKFKRLI 159
I HL FADD ++F +I + I F + +G I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 160 MRLLKVRNASTSEKYMGAQLFIGANKTNAFKDILQQIQKKLESWNHSFLSQAGRTIVAAT 219
+ + + +Y+G L T+ + ++++I+ ++ W LS AGR + ++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IVAAVPRYQMQCFAIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKALGGLGI 276
++ ++ + M F +P K I ++ SF W K AWS +C PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 277 HLPELDNKAMLCKLAWRVKAEPNALWVRFLKAKYFPHKESPGPVKPNY---SWTWNTIRK 333
+ NK L KL WR+ + +LWV++L+ Y K S + N SW W I K
Sbjct: 187 RSLKEANKVSLLKLIWRMLSS-TSLWVQWLRL-YLLRKGSFWSISGNTTLGSWMWKKILK 244
Query: 334 HMDLIEDFLTWEVHNGNKINIWKDNWIPDINTPLNLQN-----ETNIT---KVAQLIQNN 385
H L F+ ++HNG+ + W DNW I +++ + IT VA+ + N+
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 386 ---EWNEEVLSRIFDPQAQNLIKAIPIDSEGEDQRKWTLNKS-GRFTVNSMYKYLSTSMN 441
+ L RI D A+ + + + GED +W N + N+ + +T
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGL---TSGEDTVRWKGNGDIFKPCFNTKETWAAT--R 358
Query: 442 SPPLHNPNWKFIWKLPTIPRIQTFIWKICTQTLPVRKRIGKFIDG-NTNCPNCAE-IESI 499
P L +K +W P+ W L R+ + G +++C C +E+
Sbjct: 359 EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETR 418
Query: 500 EHALLHCPLAKNIWFYFN--IISENISN 525
+H CP + +W ++S++ +N
Sbjct: 419 DHLFFTCPYSAEVWSTLTRKLLSQHFTN 446
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 190/435 (43%), Gaps = 29/435 (6%)
Query: 100 IAHLLFADDCIIFGRNSIDNIYILKNILRIFCESTGQIINYTKSNIFYSKNSHPKFKRLI 159
I HL FADD ++F +I + I F + +G I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 160 MRLLKVRNASTSEKYMGAQLFIGANKTNAFKDILQQIQKKLESWNHSFLSQAGRTIVAAT 219
+ + + +Y+G L T+ + ++++I+ ++ W LS AGR + ++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 220 IVAAVPRYQMQCFAIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKALGGLGI 276
++ ++ + M F +P K I ++ SF W K AWS +C PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 277 HLPELDNKAMLCKLAWRVKAEPNALWVRFLKAKYFPHKESPGPVKPNY---SWTWNTIRK 333
+ NK L KL WR+ + +LWV++L+ Y K S + N SW W I K
Sbjct: 187 RSLKEANKVSLLKLIWRMLS-STSLWVQWLRL-YLLRKGSFWSISGNTTLGSWMWKKILK 244
Query: 334 HMDLIEDFLTWEVHNGNKINIWKDNWIPDINTPLNLQN-----ETNIT---KVAQLIQNN 385
H L F+ ++HNG+ + W DNW I +++ + IT VA+ + N+
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNH 303
Query: 386 ---EWNEEVLSRIFDPQAQNLIKAIPIDSEGEDQRKWTLNKS-GRFTVNSMYKYLSTSMN 441
+ L RI D A+ + + + GED +W N + N+ + +T
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGL---TSGEDTVRWKGNGDIFKPCFNTKETWAAT--R 358
Query: 442 SPPLHNPNWKFIWKLPTIPRIQTFIWKICTQTLPVRKRIGKFIDG-NTNCPNCAE-IESI 499
P L +K +W P+ W L R+ + G +++C C +E+
Sbjct: 359 EPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETR 418
Query: 500 EHALLHCPLAKNIWF 514
+H CP + + F
Sbjct: 419 DHLFFTCPYSAEVPF 433
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 112 bits (281), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 168/375 (44%), Gaps = 30/375 (8%)
Query: 173 KYMGAQLFIGANKTNAFKDILQQIQKKLESWNHSFLSQAGRTIVAATIVAAVPRYQMQCF 232
+Y+G L T+ + ++++I+ ++ W LS AGR + ++++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 233 AIPKGVSKRIMTLQKSFWWGKSRGICTK---AWSSICLPKALGGLGIHLPELDNKAMLCK 289
+P K I ++ SF W K AWS +C PK GGLGI + NK L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 290 LAWRVKAEPNALWVRFLKAKYFPHKESPGPVKPNY---SWTWNTIRKHMDLIEDFLTWEV 346
L WR+ + +LWV++L+ Y K S + N SW W I KH L F+ ++
Sbjct: 146 LIWRMLSS-TSLWVQWLRL-YLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDI 203
Query: 347 HNGNKINIWKDNWIPDINTPLNLQN-----ETNIT---KVAQLIQNN---EWNEEVLSRI 395
HNG+ + W DNW I +++ + IT VA+ + N+ + L RI
Sbjct: 204 HNGSNTSFWFDNW-SKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRI 262
Query: 396 FDPQAQNLIKAIPIDSEGEDQRKWTLNKS-GRFTVNSMYKYLSTSMNSPPLHNPNWKFIW 454
D A+ + + + GED +W N + N+ + +T P L +K +W
Sbjct: 263 EDVIAEVRHQGL---TSGEDTVRWKGNGDIFKPCFNTKETWAAT--REPKLKVNWYKGVW 317
Query: 455 KLPTIPRIQTFIWKICTQTLPVRKRIGKFIDG-NTNCPNCAE-IESIEHALLHCPLAKNI 512
P+ W L R+ + G +++C C +E+ +H CP + +
Sbjct: 318 FSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV 377
Query: 513 WFYFN--IISENISN 525
W ++S++ +N
Sbjct: 378 WSTLTRKLLSQHFTN 392