BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0350.1
(155 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 79 1e-17
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 79 1e-17
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 70 5e-15
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 45 2e-06
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 79.3 bits (194), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 4 TRPNILHVVSVVSRYMGRPGKGHWQAVKWILRYLGGTAELGLVYDRRADTSGSVVGFVDS 63
TR +I V+ +S++ P H QAV IL Y+ GT GL Y +A+ V F D+
Sbjct: 391 TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV--FSDA 448
Query: 64 DFSGDLDRKRSLTGYSFTLYGSAISWRAVLQSVVALSTTEVEYMAAIEAVKEAIWLSGLF 123
F D +RS GY L S ISW++ Q VV+ S+ E EY A A E +WL+ F
Sbjct: 449 SFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFF 508
Query: 124 RDFGL 128
R+ L
Sbjct: 509 RELQL 513
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 79.3 bits (194), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 4 TRPNILHVVSVVSRYMGRPGKGHWQAVKWILRYLGGTAELGLVYDRRADTSGSVVGFVDS 63
TR +I V+ +S++ P H QAV IL Y+ GT GL Y +A+ V F D+
Sbjct: 391 TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV--FSDA 448
Query: 64 DFSGDLDRKRSLTGYSFTLYGSAISWRAVLQSVVALSTTEVEYMAAIEAVKEAIWLSGLF 123
F D +RS GY L S ISW++ Q VV+ S+ E EY A A E +WL+ F
Sbjct: 449 SFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFF 508
Query: 124 RDFGL 128
R+ L
Sbjct: 509 RELQL 513
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 70.1 bits (170), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 1 MVCTRPNILHVVSVVSRYMGRPGKGHWQAVKWILRYLGGTAELGLVYDRRADTSGSVVGF 60
+ TRP+I + V++V + M P + +K +LRY+ GT GL + ++ +V F
Sbjct: 110 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK--NSKLNVQAF 167
Query: 61 VDSDFSGDLDRKRSLTGYSFTLYGSAISWRAVLQSVVALSTTEVEYMAAIEAVKEAIWLS 120
DSD++G +RS TG+ L + ISW A Q V+ S+TE EY A E W S
Sbjct: 168 CDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
Query: 121 G 121
Sbjct: 228 A 228
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 44.7 bits (104), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MVCTRPNILHVVSVVSRYMGRPGKGHWQAVKWILRYLGGTAELGLVYDRRADTSGSVVGF 60
+ TRP++ V+ +S++ QAV +L Y+ GT GL Y +D + F
Sbjct: 3 LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDL--QLKAF 60
Query: 61 VDSDFSGDLDRKRSLTGY 78
DSD++ D +RS+TG+
Sbjct: 61 ADSDWASCPDTRRSVTGF 78