BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0360.1
(727 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 57 1e-08
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 53 6e-07
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 51 1e-06
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 47/242 (19%)
Query: 314 DLFKFVDGSFPPPSPTLPSSSTDSSSIPNPEYVYWYRVDQMLLSWLNATLT-EPILAQVL 372
D+ +DG+ LP+++ D V W + D ++ L TLT + +
Sbjct: 46 DVMGHIDGTL------LPTNAND---------VNWQKRDGIVKLSLYGTLTPKQFQGSFV 90
Query: 373 GLTSSKAVWESLEQTFSSLNSARLMNLKLQLQTSKKGSLSL------------------- 413
++S+ +W ++ F + AR + L +L+T G + +
Sbjct: 91 TSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDV 150
Query: 414 -FLNDELVLIVLAGLGPEYESFVTSVTTRTIPPSSSELHSLLLTHEFRLQFISTASPNPT 472
+ LV+ VL GL P++++ + + R PS + ++L E RL+ PNPT
Sbjct: 151 PVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLK--RAIKPNPT 208
Query: 473 AL--LTQTPLPPSSPSPSYSRSYNPTQNFNRGYRGRSSYRGGGRGRSSNRGGYSRQSVLG 530
+ + + + S +P P NF R + YRG GRG + RG R S
Sbjct: 209 HVDHSSSSTVLACSEAP-------PVTNFQRSGGNQMGYRGRGRGNNIFRGRGGRFSYYN 261
Query: 531 PP 532
P
Sbjct: 262 MP 263
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 34/227 (14%)
Query: 336 DSSSIPNP-EYVYWYRVDQMLLSWLNATLTEPILAQVLGL-TSSKAVWESLEQTFSSLNS 393
D SS P P W D ++ W+ T+T+ +L ++ + +++ +W SLE F
Sbjct: 54 DGSSTPTPMTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKE 113
Query: 394 ARLMNLKLQLQTS------------KKGSLSLFLNDE--------LVLIVLAGLGPEYES 433
AR + + +L+T+ K SLS L + LV+ +L GL +Y+
Sbjct: 114 ARALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDY 173
Query: 434 FVTSVTTRTIPPSSSELHSLLLTHEFRLQFIS------TASPNPTALLTQTPLPPSSPSP 487
+ + ++ PS +E S+LL E RL S T P+ + +L P
Sbjct: 174 ILNVIKHKSPFPSFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVP----RQQE 229
Query: 488 SYSRSYNPTQNFNRGYRGRSSYRGGGRGRSSNRGGYSRQSVLGPPPS 534
Y + Y+ N N G RGRS + G G S R + L PP+
Sbjct: 230 RYPQEYH-NNNSNMG-RGRSKKKNRGGGSSDGRYNNNNNWRLNQPPT 274
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 301 GYKSQLLPILHSQDLFKFVDGSFPPPSPTLPSSSTDSSSIPNPEYVYWYRVDQMLLSWLN 360
+K + L F F+DG+ P P P +P Y W + + M++ WL
Sbjct: 44 AWKIRFRSFLRVTKKFGFIDGTLPKPDPF------------SPLYQPWEQCNAMVMYWLM 91
Query: 361 ATLTEPILAQVLGLTSSKAVWESLEQTFSSLNSARLMNLKLQLQTSKKGSLSL 413
++T+ +L V+ ++ +WE L + F ++ L+ +L T ++G S+
Sbjct: 92 NSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSV 144