BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0380.1
(136 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 133 8e-37
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 133 8e-37
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 93 1e-24
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 133 bits (334), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 1 MSALHKNKTWTLVPKDSIMNIVDCKWIFRVKQRADGQIERYKARFVARGYSQQHGIDYDE 60
+ A+ TW + + CKW++++K +DG IERYKAR VA+GY+QQ GID+ E
Sbjct: 106 IGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIE 165
Query: 61 TFSPMVRPATIRAVLSLAISGSWIVRQLDVKNAFLNGDLSEAIFMNQPKGFI----DPKF 116
TFSP+ + +++ +L+++ ++ + QLD+ NAFLNGDL E I+M P G+ D
Sbjct: 166 TFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLP 225
Query: 117 PHHVCKLSKALYGLKQAPR 135
P+ VC L K++YGLKQA R
Sbjct: 226 PNAVCYLKKSIYGLKQASR 244
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 133 bits (334), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 1 MSALHKNKTWTLVPKDSIMNIVDCKWIFRVKQRADGQIERYKARFVARGYSQQHGIDYDE 60
+ A+ TW + + CKW++++K +DG IERYKAR VA+GY+QQ GID+ E
Sbjct: 106 IGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIE 165
Query: 61 TFSPMVRPATIRAVLSLAISGSWIVRQLDVKNAFLNGDLSEAIFMNQPKGFI----DPKF 116
TFSP+ + +++ +L+++ ++ + QLD+ NAFLNGDL E I+M P G+ D
Sbjct: 166 TFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLP 225
Query: 117 PHHVCKLSKALYGLKQAPR 135
P+ VC L K++YGLKQA R
Sbjct: 226 PNAVCYLKKSIYGLKQASR 244
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 93.2 bits (230), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 1 MSALHKNKTWTLVPKDSIMNIVDCKWIFRVKQRADGQIERYKARFVARGYSQQHGIDYDE 60
+ AL +NKTW LVP NI+ CKW+F+ K +DG ++R KAR VA+G+ Q+ GI + E
Sbjct: 48 LDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVE 107
Query: 61 TFSPMVRPATIRAVLSLA 78
T+SP+VR ATIR +L++A
Sbjct: 108 TYSPVVRTATIRTILNVA 125