BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0490.1
(160 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 55 4e-10
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 55 4e-09
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 55.1 bits (131), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 66 LVNSRPGSVFHPSRGIRQGDPLSHFLFTIDMKGLSRMLMSDNSHNKFLGFPTNNPDLEIS 125
++N P + PSRG+RQGDPLS +LF + + LS + + G +N I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 126 HLLFADD 132
HLLFADD
Sbjct: 73 HLLFADD 79
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 54.7 bits (130), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 3 QEIIHSFKKMKGATGYFGLKLDMSKDFDRIEWKFLTDIMRKLGYAEHWIKMI 54
QE +HS ++ KG G+ LKLD+ K +DRI W +L D + G+ E W+ I
Sbjct: 34 QEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVWLPEI 85