BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0550.1
(87 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46100.1 | Pentatricopeptide repeat (PPR) superfamily protein... 56 1e-10
AT5G57250.1 | Pentatricopeptide repeat (PPR) superfamily protein... 56 2e-10
AT5G12100.1 | pentatricopeptide (PPR) repeat-containing protein ... 54 1e-09
AT1G13630.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 53 2e-09
AT1G13630.4 | Tetratricopeptide repeat (TPR)-like superfamily pr... 53 2e-09
>AT5G46100.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr5:18694316-18695734 REVERSE LENGTH=472 | 201606
Length = 472
Score = 56.2 bits (134), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNLD--MAFLEQ 52
+SGLC+ G++DEA LF +MVE PT +TY +LI+G C N+D M +LE+
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEE 252
>AT5G57250.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr5:23195609-23198524 REVERSE LENGTH=971 | 201606
Length = 971
Score = 55.8 bits (133), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNLDMAF 49
+ GLCK+G+L+EA LFN+++ + + Y+TLIDG C KGNL+ AF
Sbjct: 319 IRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAF 367
Score = 42.0 bits (97), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKG 43
++GLC+ G L EA+ LF+ + I LVP+ +TY LID C +G
Sbjct: 697 INGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEG 739
Score = 41.2 bits (95), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNLDMA 48
+ G CK GQ++EA+ +FN++ + V A+ Y +ID C KG LD A
Sbjct: 489 IKGYCKTGQIEEALEMFNELRKSS-VSAAVCYNRIIDALCKKGMLDTA 535
Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNLDMAFL 50
+ GL K G ++EA+ L KM++ + P ITY +I G C G L+ AF+
Sbjct: 284 IDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFV 333
>AT5G12100.1 | pentatricopeptide (PPR) repeat-containing protein |
Chr5:3911388-3913838 FORWARD LENGTH=816 | 201606
Length = 816
Score = 53.5 bits (127), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNLDMAF 49
+ GLCK ++++A LF++M+ +L+P+ ITY TLIDGYC GN + +F
Sbjct: 221 IDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSF 269
Score = 43.5 bits (101), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNL 45
++ LCK G++++A + + + LVP + Y T+IDGYC KG+L
Sbjct: 361 LNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDL 405
>AT1G13630.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:4669784-4672826 REVERSE LENGTH=806 |
201606
Length = 806
Score = 53.1 bits (126), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNLDMAF 49
+SGLCK G++DEA+SLFN+M L P + Y +I G C G DMA
Sbjct: 370 LSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMAL 418
>AT1G13630.4 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:4670308-4672928 REVERSE LENGTH=831 |
201606
Length = 831
Score = 52.8 bits (125), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 1 MSGLCKVGQLDEAVSLFNKMVEIKLVPTAITYITLIDGYCNKGNLDMAF 49
+SGLCK G++DEA+SLFN+M L P + Y +I G C G DMA
Sbjct: 417 LSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMAL 465