BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0650.1
(523 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 59 9e-09
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 55 1e-07
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 52 7e-07
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 50 2e-06
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 48 1e-05
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 3 ELDNTALLSKLAWRLKTEPDALWAKFLKAKYFPHTDKL-GPAKPHHSWSWKTIRKHYNLI 61
E N ALL K WR+ + P++L AK K++YF +D L P S+ WK+I ++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 62 NDHATWEVHSGKDINIWDDNWIPEFNGA-------VPNNNH---SSLTKVAQLITDNN-- 109
A V +G+DI IW W+ + VP + SS+ KV+ LI ++
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 110 WNNEVLHANFDVPTQNLI 127
W +V+ F + LI
Sbjct: 182 WRKDVIEMLFPEVERKLI 199
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 124/318 (38%), Gaps = 41/318 (12%)
Query: 54 IRKHYNLINDHATWEVHSGKDINIWDDNW----IPEFNGAVPNNNHSSLTKVAQLITDNN 109
+R I D TW+ S D + W I + + SL + Q I +
Sbjct: 202 LRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQ 261
Query: 110 WNNEVLHANFDVPTQNLIKAFPVNSVGKYI-----DNNITCPNCMNIETNEHALLHCAMA 164
+ ++ H + L + PV Y I CP+C ET H L C A
Sbjct: 262 TSPKIQHFLWKC----LSNSLPVAGALAYRHLSKESACIRCPSCK--ETVNHLLFKCTFA 315
Query: 165 KNVWFSFNII-------SENITSISDWIFSWQDNTQQCYTSDDIHFVSILWILWKVRCDH 217
+ W +I +++I W+F+ + Q + + +LW LWK R +
Sbjct: 316 RLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL-VPWLLWRLWKNRNEL 374
Query: 218 CFQHEINDLNKII---------IMIKTFPKS-NKKPEENKQKPHGKWQPPTNPFIKINVD 267
F+ + +++ I+T +S KP+ N+ G+W+PP + ++K N D
Sbjct: 375 VFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSS-CGRWRPPPHQWVKCNTD 433
Query: 268 ASFINITSNTGISLIAHNAESKFIEAQVKSSRARNSEESEAMTILHGMEWA----KEQNY 323
A++ GI + N + E + +RA +S L M WA Y
Sbjct: 434 ATWNRDNERCGIGWVLRNEKG---EVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQY 490
Query: 324 KSMIIESDNMNLINHIHN 341
+I ESD+ LI ++N
Sbjct: 491 NYVIFESDSQVLIEILNN 508
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 137 KYIDNNITCPNC-MNIETNEHALLHCAMAKNVWFSFNIISENITSISDWIFSWQDNT-QQ 194
++I N+ C C ET++H C A+ VW + I + + + + + +
Sbjct: 48 RHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSS 107
Query: 195 CYTSDDIHF----VSILWILWKVRCDHCFQHEI----NDLNKIIIMIKTFPKSNKKPEEN 246
C + + ILW LWK R FQ + N L + ++ + +N +
Sbjct: 108 CLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSL 167
Query: 247 KQKPHG-----------KWQPPTNPFIKINVDASFINITSNTGISLIAHNAESKFI-EAQ 294
Q+ H KWQ P + +IK N D +F + T N + + ++ Q
Sbjct: 168 NQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQ 227
Query: 295 VKSSRARNSEESEAMTILHGMEWAKEQNYKSMIIESDNMNLINHIHNRR 343
S +S ESE ++ M+ A Q Y+ +I E D+ + ++N +
Sbjct: 228 AIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK 276
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 121/310 (39%), Gaps = 43/310 (13%)
Query: 63 DHATWEVHSGKDINIWDDNWI----PEFNGAVPNNNHSSLTKVAQLITDNNWNNEVL--- 115
D W ++ + + W+ P N N H S+ ++ WN ++
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRI-----WNLPIMPKL 171
Query: 116 -HANFDVPTQNLIKAFPVNSVGKYIDNNITCPNC-MNIETNEHALLHCAMAKNVW----- 168
H + +Q L + + G ID +CP C E+ HAL C A W
Sbjct: 172 KHFLWRALSQALATTERLTTRGMRIDP--SCPRCHRENESINHALFTCPFATMAWRLSDS 229
Query: 169 ------FSFNIISENITSISDWIFSWQDNTQQCYTSDDIHFVSILWILWKVRCDHCFQHE 222
N ENI++I +++ QD T + + V ++W +WK R + F
Sbjct: 230 SLIRNQLMSNDFEENISNILNFV---QDTTMSDF--HKLLPVWLIWRIWKARNNVVFNKF 284
Query: 223 INDLNKIIIMIKT-------FPKSNKK-PEENKQKPHGK--WQPPTNPFIKINVDASF-I 271
+K ++ K +S+KK P +Q K W+ P ++K N DA F +
Sbjct: 285 RESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDV 344
Query: 272 NITSNTGISLIAHNAESKFIEAQVKSSRARNSEESEAMTILHGMEWAKEQNYKSMIIESD 331
TG +I ++ + +K + N E+E +L ++ + Y + +E D
Sbjct: 345 QKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGD 404
Query: 332 NMNLINHIHN 341
LIN I+
Sbjct: 405 CQTLINLING 414
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 33/231 (14%)
Query: 139 IDNNITCPNC-MNIETNEHALLHCAMAKNVWFSFNIISENITSISDWIFSWQDN------ 191
ID + C C + ET H + +C ++VW S NII N S++DN
Sbjct: 69 IDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPS---SFEDNLNRLIQ 125
Query: 192 ---TQQCYTSDDIHFVSILWILWKVRCDHCFQHE-----------INDLNKIIIMIKTFP 237
TQ + D I+W LWK R FQ + I D + + +T
Sbjct: 126 LSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTE 185
Query: 238 KSN----KKPEENKQKPHGKWQPPTNPFIKINVDASFINITSNTGISLIAHNAESKFI-- 291
+N P + ++ +W PP ++K N D+ + + T +
Sbjct: 186 NTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLC 245
Query: 292 -EAQVKSSRARNSEESEAMTILHGMEWAKEQNYKSMIIESDNMNLINHIHN 341
A+++SS S +EA+ LH ++ + + ESD+ +L+ I+N
Sbjct: 246 GNAKLQSSTC--SLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINN 294
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Query: 206 ILWILWKVRCDHCFQHEINDLNKIIIMIKTFPK-------SNKKPEENKQKP---HGKWQ 255
++W +WK D F H + M K +N++ N+ + KW
Sbjct: 47 LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWS 106
Query: 256 PPTNPFIKINVDASFINITSNTGISLIAHNAESKFIEAQVKSSRAR-NSEESEAMTILHG 314
PP +K N DAS + +G+ I N++ IE + + R +EE+E T++
Sbjct: 107 PPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWA 166
Query: 315 MEWAKEQNYKSMIIESDNMNLINHIHNR 342
++ + +K +I E DN + I+ +
Sbjct: 167 IQASYGFGHKKVIFEGDNQTITRMINTK 194