BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0680.1
(461 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD LEN... 55 4e-09
>AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD
LENGTH=110 | 201606
Length = 110
Score = 54.7 bits (130), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 76 AADWWDQLQLLRKRQGRAPIQSWSSIKENLKEWFLPPDYQQHLLRIYQNCRQ 127
AA WW Q Q RKR G+ PI+SW +KE L + FLPP Y + +N +Q
Sbjct: 2 AASWWQQKQKTRKRAGKNPIKSWDKLKEKLCKTFLPPHYTSSVSNRLKNVKQ 53