BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0820.1
(386 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03170.1 | AP2/B3-like transcriptional factor family protein ... 48 6e-06
>AT4G03170.1 | AP2/B3-like transcriptional factor family protein |
Chr4:1400832-1401584 FORWARD LENGTH=250 | 201606
Length = 250
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 312 GLDVMVVDSEEVTSHLQFKFWKSLNKHVFTSTWNSFVKRLGLKGQTHKVHIWCFRLPPEK 371
G+DV V + ++FK W V TS W FV+ GL V +W FR K
Sbjct: 176 GIDVSVYGPDGKVQQMEFKMWNGDKTPVLTSGWKQFVEDYGLSMTCDFVTVWMFRHI--K 233
Query: 372 GSKLCFAI 379
KLCFAI
Sbjct: 234 TRKLCFAI 241