BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000034.1_g0860.1
         (230 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    72   7e-15

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 71.6 bits (174), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 49  NDLVSSWLIKSVDPSLRTSILYDDNDYDVWTNLHDRFYQTNAPKVFQLKRVISSLKQSGS 108
           N +V  WL+ S+   L  S++Y +  + +W +L   F      K++QL+R +++L+Q G 
Sbjct: 83  NAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGD 142

Query: 109 DISTYFTNLKALQDELNSLTTTETCICRHGRSLLECTK-------QDKDMEFLQG--LDD 159
            +  YF  L  +  EL+       C C  G    ECTK       +++  EFL G  L+ 
Sbjct: 143 SVEEYFGKLSKVWMELSEYAPIPECKC--GGCNCECTKRAEEAREKEQRYEFLMGLKLNQ 200

Query: 160 WFSAIRSQILLMDPFSSNLRIHSLVKQEE 188
            F A+ ++I+   P  S     ++VK  E
Sbjct: 201 GFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229

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