BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0920.1
(198 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 54 2e-08
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 53 2e-08
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 43 7e-05
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 24 LISARLDGSNFLAWKDQVENALIGNDLMCYMDETYIEPSQLTVVDGRDVINHAYLQWRKT 83
++ L+ N+ W++ E + ++ ++D + P+ +T +W++
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSST-PTPMTEK-----------RWKER 70
Query: 84 YSFVKSCTKATISHSIASDILGLQ-TSRDIWSYLEMVFLQEFEAQKSSLRNKIQNIKKGS 142
VK TI+ S+ I+ + T+RD+W LE +F EA+ N+++
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 143 SSVSDYVSKIKSIADSLVAVNDRVSDSELARISLQGVRREYSH 185
SV +Y K+KS++D L V+ +SD L L G+ +Y +
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDY 173
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 53.1 bits (126), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 20 NLTNLISARLD--GSNFLAWKDQVENALIGNDLMCYMDETYIEPSQLTVVDGRDVINHAY 77
N+ + I LD SN+ AW++ + D+M ++D T L + DV
Sbjct: 15 NIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------LLPTNANDV----- 63
Query: 78 LQWRKTYSFVKSCTKATIS-HSIASDILGLQTSRDIWSYLEMVFLQEFEAQKSSLRNKIQ 136
W+K VK T++ + TSRDIW ++ F +A+ L ++++
Sbjct: 64 -NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR 122
Query: 137 NIKKGSSSVSDYVSKIKSIADSLVAVNDRVSDSELARISLQGVRREY 183
G V+DY K+K +ADSL V+ V+D L L G+ ++
Sbjct: 123 TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKF 169
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 30 DGSNFLAWKDQVENALIGNDLMCYMDETYIEPSQLTVVDGRDVINHAYLQWRKTYSFVKS 89
D N++AWK + + L ++D T +P D + Y W + + V
Sbjct: 38 DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------DPFSPLYQPWEQCNAMVMY 88
Query: 90 CTKATISHSIASDILGLQTSRDIWSYLEMVFLQEFEAQKSSLRNKIQNIKKGSSSVSDYV 149
+++ + ++ +T+ +W L VF+ + + LR ++ +++G SV +Y
Sbjct: 89 WLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYF 148
Query: 150 SKIKSI 155
K+ +
Sbjct: 149 GKLSKV 154