BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0930.1
(368 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 50 1e-07
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 47 2e-06
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 50.4 bits (119), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 202 NRQITFVGNTLLIQASMPKHFWFHAYATTTYIINRTPSKFLSLQTPYEVLFQKCPNYDTI 261
NR I ++L + +PK F A T +IIN+ PS ++ P EV FQ P Y +
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 262 KVFGSLCYPYLGNTKADKLSPKSAK 286
+ FG C Y+ + KL P++ K
Sbjct: 62 RRFG--CVAYI-HCDEGKLKPRAKK 83
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 28 AHVAIATAKTWHHRLGHTTKEIYLTLEKENKIRISKKDMKNICSSCQLGKSQRLSFPISE 87
A A + WH RL H ++ L K+ + SK C C GK+ R++F +
Sbjct: 62 AETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQ 121
Query: 88 SSLSVPLQLIHCDIWGPSPI 107
+ PL +H D+WG +
Sbjct: 122 HTTKNPLDYVHSDLWGAPSV 141