BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g0990.1
(940 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 70 3e-12
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 59 5e-09
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 57 2e-08
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 52 7e-08
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 87 FITEKLDDSNYLMWRDQVETMLNTYELIGFVNGSFEEPPQIKIIHGVEQVNPDFLLWRSK 146
F+T L+ NY +WR+ ET+ ++ ++G ++GS P + W+ +
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEK------------RWKER 70
Query: 147 ESFVKSYLKSTLSKSIYYDIYGLK-SAQEIWNYLEITNNEGLESKKDQLRRKLQSIKKGN 205
+ VK ++ T++ S+ I + +A+++W LE + E++ Q +L++ +
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 206 SSISEYLRELKQVSDALLSVHDRVNDSELVRLAIQGLSSDYDQFTIALMAHNEHLSLAQL 265
S+ EY ++LK +SD L +V ++D LV + GL+ YD + + S +
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 266 KSRLIQHE 273
+S L+ E
Sbjct: 191 RSMLLMEE 198
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 78 LPP-ISSVTSFITEKL--DDSNYLMWRDQVETMLNTYELIGFVNGSFEEPPQIKIIHGVE 134
LPP I + F +KL D+ NY+ W+ + + L + GF++G+ +P +
Sbjct: 20 LPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------D 70
Query: 135 QVNPDFLLWRSKESFVKSYLKSTLSKSIYYDIYGLKSAQEIWNYLEITNNEGLESKKDQL 194
+P + W + V +L ++++ + + ++A ++W L ++ K QL
Sbjct: 71 PFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQL 130
Query: 195 RRKLQSIKKGNSSISEYLRELKQV 218
RR+L ++++G S+ EY +L +V
Sbjct: 131 RRRLATLRQGGDSVEEYFGKLSKV 154
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 81 ISSVTSFITEKLD--DSNYLMWRDQVETMLNTYELIGFVNGSFEEPPQIKIIHGVEQVNP 138
+S++ S I LD +SNY WR+ T +++++G ++G+ + N
Sbjct: 13 VSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------------LLPTNA 60
Query: 139 DFLLWRSKESFVKSYLKSTLSKSIYYDIYGLKS-AQEIWNYLEITNNEGLESKKDQLRRK 197
+ + W+ ++ VK L TL+ + + S +++IW ++ +++ +L +
Sbjct: 61 NDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSE 120
Query: 198 LQSIKKGNSSISEYLRELKQVSDALLSVHDRVNDSELVRLAIQGLSSDYDQFTIALMAHN 257
L++ G+ +++Y R++K+++D+L +V V D LV + GL+ +D I ++ H
Sbjct: 121 LRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNI-INVIKHR 179
Query: 258 EHLSLAQLKSRLIQHEQ 274
+ + ++Q E+
Sbjct: 180 QPFPSFDDAATMLQEEE 196
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 673 HRHITELGNTLSFHSSLPKHLWFDAFSTAVYVINRVPTKTLNGVSPFEVLFHISPDYSIF 732
+R I E ++ LPK DA +TAV++IN+ P+ +N P EV F P YS
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 733 KIFGCACYPH 742
+ FGC Y H
Sbjct: 62 RRFGCVAYIH 71