BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1010.1
(344 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 66 5e-12
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 62 1e-10
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 60 TAREFSNYLDTTFSAQNNAGKSQLLLQLQTMQKNALSMTDYVGKIKEISDAIGASHMPVS 119
T+R+ + F +A +L +L+T + + DY K+K+++D++ +PV+
Sbjct: 94 TSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVT 153
Query: 120 DIELVLHTLRGLDPDNSAFVTAIETSENLPSFSQLLPLLYTHEMRIQQQ------HTPSF 173
D LV++ L GL+P + I+ + PSF +L E R+++ H
Sbjct: 154 DRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHS 213
Query: 174 QSTTLVAKSHTPSHDSTQNRSYGSSRGGRGARFGN---RGRG 212
S+T++A S P + Q RS G+ G RG GN RGRG
Sbjct: 214 SSSTVLACSEAPPVTNFQ-RSGGNQMGYRGRGRGNNIFRGRG 254
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 12/195 (6%)
Query: 31 RWTRIDQTIISWLNTTISPSILAQTPQFN-TAREFSNYLDTTFSAQNNAGKSQLLLQLQT 89
RW D + W+ TI+ S+L + TAR+ L+ F A Q +L+T
Sbjct: 66 RWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRT 125
Query: 90 MQKNALSMTDYVGKIKEISDAIGASHMPVSDIELVLHTLRGLDPDNSAFVTAIETSENLP 149
+ LS+ +Y K+K +SD + P+SD LV+H L GL + I+ P
Sbjct: 126 TTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFP 185
Query: 150 SFSQLLPLLYTHEMR------IQQQHT--PSFQSTTLVA---KSHTPSHDSTQNRSYGSS 198
SF++ +L E R HT PS + + P N + G
Sbjct: 186 SFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGRG 245
Query: 199 RGGRGARFGNRGRGR 213
R + R G GR
Sbjct: 246 RSKKKNRGGGSSDGR 260