BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000034.1_g1010.1
         (344 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240...    66   5e-12
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    62   1e-10

>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
           Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
          Length = 308

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 60  TAREFSNYLDTTFSAQNNAGKSQLLLQLQTMQKNALSMTDYVGKIKEISDAIGASHMPVS 119
           T+R+    +   F    +A   +L  +L+T     + + DY  K+K+++D++    +PV+
Sbjct: 94  TSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVT 153

Query: 120 DIELVLHTLRGLDPDNSAFVTAIETSENLPSFSQLLPLLYTHEMRIQQQ------HTPSF 173
           D  LV++ L GL+P     +  I+  +  PSF     +L   E R+++       H    
Sbjct: 154 DRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHS 213

Query: 174 QSTTLVAKSHTPSHDSTQNRSYGSSRGGRGARFGN---RGRG 212
            S+T++A S  P   + Q RS G+  G RG   GN   RGRG
Sbjct: 214 SSSTVLACSEAPPVTNFQ-RSGGNQMGYRGRGRGNNIFRGRG 254


>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 12/195 (6%)

Query: 31  RWTRIDQTIISWLNTTISPSILAQTPQFN-TAREFSNYLDTTFSAQNNAGKSQLLLQLQT 89
           RW   D  +  W+  TI+ S+L    +   TAR+    L+  F     A   Q   +L+T
Sbjct: 66  RWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRT 125

Query: 90  MQKNALSMTDYVGKIKEISDAIGASHMPVSDIELVLHTLRGLDPDNSAFVTAIETSENLP 149
              + LS+ +Y  K+K +SD +     P+SD  LV+H L GL       +  I+     P
Sbjct: 126 TTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFP 185

Query: 150 SFSQLLPLLYTHEMR------IQQQHT--PSFQSTTLVA---KSHTPSHDSTQNRSYGSS 198
           SF++   +L   E R          HT  PS  +        +   P      N + G  
Sbjct: 186 SFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGRG 245

Query: 199 RGGRGARFGNRGRGR 213
           R  +  R G    GR
Sbjct: 246 RSKKKNRGGGSSDGR 260


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