BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1030.1
(461 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 153 1e-40
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 99 7e-22
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 93 2e-20
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 92 4e-20
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 90 1e-19
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 153 bits (387), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/486 (25%), Positives = 224/486 (46%), Gaps = 58/486 (11%)
Query: 1 MIKNPSAIWVQVLKSKYFPNTHKPSKPKANH-SWMWKSIANHYNELTDLIFWDINKGDKV 59
M+ P ++ +V KS+YF + + P + S++WKSI L + G+ +
Sbjct: 76 MLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDI 135
Query: 60 NIWQDFWIPNHP----------PPIINNKEFSLTWVSQLI--TNDNWNVQLLQKCFEEDV 107
IW+ W+ + P PP S+ VS LI + W +++ F E
Sbjct: 136 IIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVE 195
Query: 108 QKAIQSININ-QNDDDKPIWTLTRSGNFSIKTMYNYLR--MNNMNHMQDQTD------WY 158
+K I + + D W T SG++++K+ Y L +N + Q+ ++ +
Sbjct: 196 RKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQ 255
Query: 159 FIWNMNLIPRVKLFIWKCCTNSLPVKPKIG-KFIGNSYTCVNCAE-DETLDHVMLHCTFA 216
IW P+++ F+WKC +NSLPV + + + C+ C ET++H++ CTFA
Sbjct: 256 KIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFA 315
Query: 217 KAIWFHFQVR-------TDQIGSTMQWIF-------QWKDLPEELTQLYAKILWFIWKAR 262
+ W + D I + W+F QW E+ +QL +LW +WK R
Sbjct: 316 RLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EKASQLVPWLLWRLWKNR 371
Query: 263 CENCFNENKQNLRQIIDRINNTTITPLKIETTTKTKNRK----KTKGSSWIPPEKPFLKI 318
E F + N ++++ R + + +I T ++ K ++ W PP ++K
Sbjct: 372 NELVFRGREFNAQEVLRRAED-DLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKC 430
Query: 319 NVDASFTNMTEQAGIGCIIRDEDSNFIIAAADSV-RCQNAEEGEGLAILHSMRWAL---- 373
N DA++ E+ GIG ++R+E A ++ + ++ E E L +MRWA+
Sbjct: 431 NTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE----LEAMRWAVLSLS 486
Query: 374 ELKISHIHIESDNQSLINFIKGHKEGIHWQTESTLQQVQTLRKQFEAAIFSFVHREGNAP 433
+ +++ ESD+Q LI + + + I + T+Q +Q L QF F F+ REGN
Sbjct: 487 RFQYNYVIFESDSQVLIEIL--NNDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTL 544
Query: 434 ADALAK 439
A+ +A+
Sbjct: 545 AERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 109/470 (23%), Positives = 196/470 (41%), Gaps = 53/470 (11%)
Query: 13 LKSKYFPNTH-KPSKPKANHSWMWKSIANHYNELTDLIFWDINKGDKVNIWQDFWIPNHP 71
+K++YF + +K + S+ W S+ + L I G + I D + +HP
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 72 PPIINNKE-FSLTWVSQLITNDN----WNVQLLQKCFEEDVQKAIQSININQNDD-DKPI 125
P +N +E + ++ L W+ + + ++ I I + ++ DK I
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 126 WTLTRSGNFSIKTMYNYLRMN------NMNHMQDQTDWYF-IWNMNLIPRVKLFIWKCCT 178
W +G +++++ Y L + +N D IWN+ ++P++K F+W+ +
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 179 NSLPVKPKI---GKFIGNSYTCVNC-AEDETLDHVMLHCTFAKAIW-------FHFQVRT 227
+L ++ G I S C C E+E+++H + C FA W Q+ +
Sbjct: 181 QALATTERLTTRGMRIDPS--CPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMS 238
Query: 228 DQIGSTMQWIF---QWKDLPEELTQLYAKILWFIWKARCENCFNENKQNLRQIIDRINNT 284
+ + I Q + + L ++W IWKAR FN+ +++ +
Sbjct: 239 NDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSK-------- 290
Query: 285 TITPLKIET---TTKTKNRKKTKGSS---------WIPPEKPFLKINVDASFTNMTEQAG 332
T+ K ET T++ KKT + W P ++K N DA F +A
Sbjct: 291 TVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEAT 350
Query: 333 IGCIIRDEDSNFII-AAADSVRCQNAEEGEGLAILHSMRWALELKISHIHIESDNQSLIN 391
G IIR+ I + N E E A+L +++ + + +E D Q+LIN
Sbjct: 351 GGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLIN 410
Query: 392 FIKGHKEGIHWQTESTLQQVQTLRKQFEAAIFSFVHREGNAPADALAKWG 441
I G H + L+ + +F + F F+ R+GN A LAK+G
Sbjct: 411 LING--ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYG 458
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 136/306 (44%), Gaps = 34/306 (11%)
Query: 160 IWNMNLIPRVKLFIWKCCTNSLPVKPKI-GKFIGNSYTCVNCA-EDETLDHVMLHCTFAK 217
IW +++ P++K F+W+C T +L ++ + I C C E+ET+ H+M +C + +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 218 AIWFHFQVRTDQIGSTMQW--IFQWKDLPEELTQLYAK-------------ILWFIWKAR 262
++W R+ I QW ++D L QL I+W +WK+R
Sbjct: 97 SVW-----RSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 263 --------CENCFNENKQNLRQIIDRIN-NTTITPLKIETTTKTKNRKKTKGSSWIPPEK 313
C++ E ++ ++ + +N N T + T + S W PP +
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPE 211
Query: 314 PFLKINVDASFTNMTEQAGIGCIIRDEDSNFIIAAADSVRCQNAE-EGEGLAILHSMRWA 372
++K N D+ +T + G IR+ + + ++ ++ E L LH+++
Sbjct: 212 GWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVI 271
Query: 373 LELKISHIHIESDNQSLINFIKGHKEGIHWQTESTLQQVQTLRKQFEAAIFSFVHREGNA 432
+ ++ ESD++SL+ I ++ H + + ++ + FV+RE N+
Sbjct: 272 WAHGLRYVWFESDSKSLVTLINNGED--HSLLGTLIYDIRHWMLKLPYCSLEFVNRERNS 329
Query: 433 PADALA 438
ADALA
Sbjct: 330 AADALA 335
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 138/301 (45%), Gaps = 23/301 (7%)
Query: 160 IWNMNLIPRVKLFIWKCCTNSLPVKPKIGK-FIGNSYTCVNCA-EDETLDHVMLHCTFAK 217
IW + P++K F+WK + +L + + I N C C EDET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 218 AIWF-----HFQVRTDQIG--STMQWIFQ--WKDLPEELTQLYAKILWFIWKARCENCFN 268
+W H ++RT I + M+ + + +L L ILW +WK+R + F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 269 ENKQNLRQIIDRINN---------TTITPLKIETTTKTKNRKKTKGSSWIPPEKPFLKIN 319
+ + + + R N T + L + + + + W P ++K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 320 VDASFTNMTEQAGIGCIIRDEDSNFIIAA-ADSVRCQNAEEGEGLAILHSMRWALELKIS 378
D +F + T A G ++RDE+ ++ + A ++ E E A++ +M+ A
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYR 257
Query: 379 HIHIESDNQSLINFIKGHKEGIHWQTESTLQQVQTLRKQFEAAIFSFVHREGNAPADALA 438
+ E D++ + + + E +++ + +++ + +K+FE A+F +V R N PAD LA
Sbjct: 258 KVIFEGDSKQVEELM--NNEKLNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQPADILA 315
Query: 439 K 439
K
Sbjct: 316 K 316
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 27/264 (10%)
Query: 196 TCVNCAED-ETLDHVMLHCTFAKAIWFHFQVR-------TDQIGSTMQWIFQWK-DLPE- 245
+CV C + ET++H++ C FA+ +W + TD + + + W+ + ++P+
Sbjct: 11 SCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKL 70
Query: 246 -ELTQLYAKILWFIWKARCENCFNENKQNLRQIIDRINNTT---ITPLKIETTTKTKNRK 301
++ L +LW +WK+R E F + + +++ R T ++E +
Sbjct: 71 GKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVE 130
Query: 302 KTKGSSWIPPEKPFLKINVDASFTNMTEQAGIGCIIRDEDSNFIIAAADSV-RCQNAEEG 360
+ W P ++K N DA++ + GIG I+R+E + A ++ R +N E
Sbjct: 131 RNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEA 190
Query: 361 EGLAILHSMRWAL----ELKISHIHIESDNQSLINFIKGHKEGIHWQT-ESTLQQVQTLR 415
E L ++RWA+ I ESD Q+L+N + W T + L+ +Q L
Sbjct: 191 E----LEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDD---FWPTLQPALEDIQQLL 243
Query: 416 KQFEAAIFSFVHREGNAPADALAK 439
FE F F R GN AD +A+
Sbjct: 244 HHFEEVKFEFTPRGGNKVADRIAR 267