BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1100.1
(822 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 78 4e-15
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 77 1e-14
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 53 3e-07
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 50 1e-06
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 47 4e-05
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 30/247 (12%)
Query: 23 VSVKLNGANYLLWRMQILQLIEGMKLLNFIKEEAPEIENNESSVRILEEWKNTD-LLRSW 81
V + + +NY WR L ++ I + + N + V W+ D +++
Sbjct: 22 VMLDIEESNYDAWRELFLTHCLSFDVMGHI--DGTLLPTNANDV----NWQKRDGIVKLS 75
Query: 82 MLGTLTEDAF-SHVLGLSTAKQMWETLENTYLQATKDREFQLKQQLTSLKKGTTSLAEFL 140
+ GTLT F + ST++ +W ++N + R +L +L + G +A++
Sbjct: 76 LYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYY 135
Query: 141 RQFKTICDGLAAIQKPLTDDDKVLVLSNSLGTRYDTFVTTMLSKPPFPSYNQFVTALNGY 200
R+ K + D L + P+TD + V+ + N L ++D + + + PFPS++ T L
Sbjct: 136 RKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEE 195
Query: 201 EIR-----HPAPAHQHESIDHNYAF-------------FSKSNNGRNFYHKRGQSNHHFT 242
E R P P H +DH+ + F +S + Y RG+ N+ F
Sbjct: 196 EDRLKRAIKPNPTH----VDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGRGNNIFR 251
Query: 243 SKGKGFS 249
+G FS
Sbjct: 252 GRGGRFS 258
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 22 IVSVKLNGANYLLWRMQILQLIEGMKLLNFIKEEAPEIENNESSVRILEEWKNTD-LLRS 80
V++ LN NY +WR L +L I + E + WK D L++
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTE------KRWKERDGLVKM 76
Query: 81 WMLGTLTEDAFSHVLGLS-TAKQMWETLENTYLQATKDREFQLKQQLTSLKKGTTSLAEF 139
W+ GT+T+ ++ + TA+ +W +LEN + + R Q + +L + S+ E+
Sbjct: 77 WIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEY 136
Query: 140 LRQFKTICDGLAAIQKPLTDDDKVLVLSNSLGTRYDTFVTTMLSKPPFPSYNQFVTALNG 199
++ K++ D L + P++D V+ L N L +YD + + K PFPS+ + + L
Sbjct: 137 CQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLM 196
Query: 200 YEIR 203
E R
Sbjct: 197 EESR 200
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 17 PHLISIVSVKLNGANYLLWRMQILQLIEGMKLLNFIKEEAPEIENNESSVRILEEWKNTD 76
P SI + + NY+ W+++ + K FI P+ + + + W+ +
Sbjct: 27 PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSP---LYQPWEQCN 83
Query: 77 -LLRSWMLGTLTEDAFSHVLGLSTAKQMWETLENTYLQATKDREFQLKQQLTSLKKGTTS 135
++ W++ ++T+ V+ TA +MWE L ++ + +QL+++L +L++G S
Sbjct: 84 AMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDS 143
Query: 136 LAEFLRQFKTI 146
+ E+ + +
Sbjct: 144 VEEYFGKLSKV 154
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 430 GTRRGDLYALD--VGGGTTTLPSIKQESVPIDIWHQRLGHTHSKPLEYLSNKNLILVSNW 487
G R LY L V G + L ++ +WH RL H + +E L K L S+
Sbjct: 41 GNRHDSLYILQGSVETGESNLAETAKDET--RLWHSRLAHMSQRGMELLVKKGF-LDSSK 97
Query: 488 TKTYQVCSSCQLGKSCRLSFPSLNKVVSEPIIKIHCDLWG-PSPILS 533
+ + C C GK+ R++F + P+ +H DLWG PS LS
Sbjct: 98 VSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVPLS 144
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 130/325 (40%), Gaps = 38/325 (11%)
Query: 2 ANNTTTSLFLSTSTLPHLISIVSV-KLNGANYLLWRMQILQLIEGMKLLNFIKEEAPEI- 59
A N TS + + H S++ + + +G +YL W Q+ ++ +KL + E P I
Sbjct: 173 ARNGDTSEAVDKDS-SHGFSVIKISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIG 231
Query: 60 --ENNESSVRIL-------EEWKNTD-LLRSWMLGTLTEDAFS-HVLGLSTAKQMWETLE 108
+ E++ R + ++W D L + ++ +L++ + + AK++W+ L+
Sbjct: 232 SSQGPETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELK 291
Query: 109 NTY-LQATKDREFQLKQQLTSLKKGTTSLAEFLRQFKTICDGLAAIQKPLTDDDKVLVLS 167
Y +K + Q+++ + + E ++ F I D + + + L
Sbjct: 292 WVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAG---------MFLD 342
Query: 168 NSLGTRYDTFVTTMLSKPPFPSYNQFVTALNGYEIRHPAPAHQHESIDHNYAFFSKSNNG 227
+ V+T++SK P PS+ F T L E + E + G
Sbjct: 343 EAF------HVSTIISKFP-PSWRGFCTRL--MEEEYLPVWMLMERVKAEEELLRNGAKG 393
Query: 228 RNFYHKRGQSNHHFTSKGKGFSPASHSQHYDRRSPLKNREGPPKCSICGRFGHFASKCWY 287
+ G S T S S + R+ P ++ C CGR GH A CW
Sbjct: 394 VTYRPATGSSQMERTPSLGTTHRGSQSVGWKRKEPERDERVIIVCDNCGRKGHLAKHCWG 453
Query: 288 RDNPTFDHEDAAFEKQNNLSKALAA 312
+ ++ A K N ++ ++AA
Sbjct: 454 SKS-----DERASGKSNRINSSVAA 473