BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1110.1
(212 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 165 1e-46
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 165 1e-46
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 136 2e-40
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 165 bits (417), Expect = 1e-46, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 109/171 (63%), Gaps = 4/171 (2%)
Query: 37 AEPPEPKTLKTALKQPQWVNAMHEELAALHANKTWTSVPRPPHQNIVGSKWVFKTKLKAD 96
A+ EP T A + W AM +E+ A+ TW PP++ +G KWV+K K +D
Sbjct: 81 AKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 140
Query: 97 GTIERHKARLVAKGYSQIEGVDFAETYSPVIKTPTVRVVLNVALVRGWPLRQLDVKNAFL 156
GTIER+KARLVAKGY+Q EG+DF ET+SPV K +V+++L ++ + + L QLD+ NAFL
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 157 HGHLKETVYMEQPPGFV----DQSKSNYVFRLNKALSGLKQAPRAWFDRFS 203
+G L E +YM+ PPG+ D N V L K++ GLKQA R WF +FS
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFS 251
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 165 bits (417), Expect = 1e-46, Method: Composition-based stats.
Identities = 79/171 (46%), Positives = 109/171 (63%), Gaps = 4/171 (2%)
Query: 37 AEPPEPKTLKTALKQPQWVNAMHEELAALHANKTWTSVPRPPHQNIVGSKWVFKTKLKAD 96
A+ EP T A + W AM +E+ A+ TW PP++ +G KWV+K K +D
Sbjct: 81 AKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 140
Query: 97 GTIERHKARLVAKGYSQIEGVDFAETYSPVIKTPTVRVVLNVALVRGWPLRQLDVKNAFL 156
GTIER+KARLVAKGY+Q EG+DF ET+SPV K +V+++L ++ + + L QLD+ NAFL
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200
Query: 157 HGHLKETVYMEQPPGFV----DQSKSNYVFRLNKALSGLKQAPRAWFDRFS 203
+G L E +YM+ PPG+ D N V L K++ GLKQA R WF +FS
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFS 251
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 136 bits (342), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 79/108 (73%)
Query: 32 LTVGPAEPPEPKTLKTALKQPQWVNAMHEELAALHANKTWTSVPRPPHQNIVGSKWVFKT 91
LT+ EPK++ ALK P W AM EEL AL NKTW VP P +QNI+G KWVFKT
Sbjct: 18 LTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKT 77
Query: 92 KLKADGTIERHKARLVAKGYSQIEGVDFAETYSPVIKTPTVRVVLNVA 139
KL +DGT++R KARLVAKG+ Q EG+ F ETYSPV++T T+R +LNVA
Sbjct: 78 KLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125