BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1140.1
(1117 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 116 2e-26
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 75 8e-16
AT3G31430.1 | zinc knuckle (CCHC-type) family protein | Chr3:127... 65 1e-10
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 64 4e-10
AT5G36228.1 | nucleic acid binding / zinc ion binding protein | ... 62 2e-09
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 169/364 (46%), Gaps = 25/364 (6%)
Query: 482 IGDMNAIGTRSEKWGGAQAT-PF--LNQFNTFINESGLLDLGFYGPAYTWCNNQAPQRQT 538
+GD + I S+ + Q + P L +F + +S L+D+ G YTW N+Q
Sbjct: 224 VGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNPII 283
Query: 539 RERLDRVLVSTGWLHSYPNA-GVYHLPRYNSDHCPILLKTVVQGTIKQPQSKFE--AYWV 595
R +LDR + + W S+P+A V+ L SDH P ++ +++ K+ + F ++
Sbjct: 284 R-KLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCII--ILENLPKRSKKCFRYFSFLS 339
Query: 596 KHRDFNTVLSNSWE------AHEGTLISKLQAVKSDIRRWGNTSFGHIDRKLKLLRNNLT 649
H F L+ +WE +H +L L+A K + FG+I K K ++L
Sbjct: 340 THPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLE 399
Query: 650 QVQA---LTPTEETMSLESSLQEDILLWEEYQRTRLEQRTRQRWALNGDRNTKAFHVAVK 706
+Q+ P++ +E ++ + + Q++R +W +GD NT+ FH +
Sbjct: 400 SIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVIL 459
Query: 707 NRRRKNQISFISTPTGTRLTKDEEIADHIVSHFQQAFQREPVVEPPIEIIQSYKAI---- 762
+ KN I F+ R+ ++ + IV+++ + + P + +Q K I
Sbjct: 460 ANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTP-DSVQRIKDIHPFR 518
Query: 763 -SDEDKRLISQIPSSEEITVAIKQLGQLKSPGPDGFPCLFYSKAWDKIGPDIVNYIQLAF 821
+D +S +PS +EIT A+ + + K+PGPD F F+ ++W + + ++ F
Sbjct: 519 CNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFF 578
Query: 822 QTAQ 825
+T
Sbjct: 579 RTGH 582
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 75.5 bits (184), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 45/67 (67%)
Query: 888 IINGQTHGHFSSSRGLRQGCPLSPYLFILVSQTLSFLLDKYEADNIFKGYRVNQRAPRVS 947
IING G + SRGLRQG PLSPYLFIL ++ LS L + + G RV+ +PR++
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 948 HLLFADD 954
HLLFADD
Sbjct: 73 HLLFADD 79
>AT3G31430.1 | zinc knuckle (CCHC-type) family protein |
Chr3:12795861-12796871 REVERSE LENGTH=336 | 201606
Length = 336
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 90 VDLVVGGAPWLIKEDLILVERCEADKSPIDHTFDSSWFYVQFHGLPVSLLNATTVNMLGQ 149
++ V+ PW + +IL++R E P F F+VQ G+P LN V +G+
Sbjct: 183 LETVLRRGPWAFNDWMILLQRWE----PQIPLFPFIPFWVQIRGIPFQFLNRGVVEHIGR 238
Query: 150 ALGKIIPAT-KEEELRWITFGRVKLEVMVHQPLPRVVQLQLTGGGIKTISLRFEKLGKFC 208
ALG+++ E + + F RV L + PL Q T G + R+E+L FC
Sbjct: 239 ALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFC 298
Query: 209 FFCGLLGHSMKFC 221
CG+L H C
Sbjct: 299 EVCGMLTHDFGAC 311
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 460 DRAHFWDSIKVLLSS---LSSPYCCIGDMNAIGTRSEKWGGAQAT---PFLNQFNTFINE 513
+R WD I L +S +SP+ +GD N I + +E + + L + +
Sbjct: 100 ERRSLWDDITRLSASSPLCNSPWLVVGDFNQIASVTEHYSLMPSNISLQGLEDLQACMRD 159
Query: 514 SGLLDLGFYGPAYTWCNNQAPQRQTRERLDRVLVSTGWLHSYPNAGVYHLPRYNSDH--C 571
S L+DL G YTW N+Q R +LDR +V+ WL ++P A P +SDH C
Sbjct: 160 SDLVDLPCRGVLYTWSNHQQDNPILR-KLDRAIVNGCWLATFPTASAIFDPPSDSDHAAC 218
Query: 572 PILLKTVVQGTIKQPQSKFEAYWVKHRDFNTVLSNSWE 609
++L + K+ K+ ++ H DF + + +W+
Sbjct: 219 MVILNNSPPLS-KKKSFKYFSFLSTHPDFISSILAAWQ 255
>AT5G36228.1 | nucleic acid binding / zinc ion binding protein |
Chr5:14271691-14272776 FORWARD LENGTH=361 | 201606
Length = 361
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 11/225 (4%)
Query: 1 MEIEDINFLQQLASLSTNEPEIKTVLSSQSEIGDDQYTQCCVL-KILSHKTFHTDLMHRK 59
M E N +Q + L EPE+ + + +G + +L +IL+ +T + +
Sbjct: 1 MSDELWNAIQHM-DLGREEPEL--YIPYHAYVGALASNRLSLLGRILNPQTQSVERAILE 57
Query: 60 LQAVWNLPHQYTIQEVSTNVFLAKLGTSPEVDLVVG--GAPWLIKEDLILVERCEADKSP 117
L W L Q + + F + + E+DL+ G APW+ E I ++R E +
Sbjct: 58 LPYQWGLGTQVHGRILDDRCFQVRFRS--EIDLLNGLRRAPWVFNEWFIALQRWEDFPTE 115
Query: 118 IDHTFDSSWFYVQFHGLPVSLLNATTVNMLGQALGKIIPAT-KEEELRWITFGRVKLEVM 176
TF W +++ G+P+ ++ TV ++ LG+++ EE ITF RVK+ +
Sbjct: 116 DFLTFIDVWVHIR--GIPLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMD 173
Query: 177 VHQPLPRVVQLQLTGGGIKTISLRFEKLGKFCFFCGLLGHSMKFC 221
+PL +++ I +EKL + C C + H + C
Sbjct: 174 FTEPLRFFRRVRFASRERAMIGFEYEKLQRVCTNCCRVNHQVSHC 218