BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1150.1
(408 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 117 1e-28
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 113 7e-27
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 92 3e-20
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 91 5e-20
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 66 5e-12
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 117 bits (293), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/423 (26%), Positives = 188/423 (44%), Gaps = 38/423 (8%)
Query: 9 IGSGFDIKINRDPWVPEIAEKIPR-VNTILPVNLNRVSDLID--ADTHTWKASLIREVFQ 65
IG G +I+I D V PR +NT +++L + + W S I +
Sbjct: 42 IGDGQNIRIGLDNIVDS---HPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVD 98
Query: 66 PSSAEAILQIPLSRRATVDRLIWMPQPQGMFSAKSYYKTVSPTH-PNTRAPVDFP----- 119
S I +I L++ D++IW G ++ +S Y + TH P+T P P
Sbjct: 99 QSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLL--THDPSTNIPAINPPHGSI 156
Query: 120 --WSKLWKSTNIEPKVQLFIWRLVNRGLPVRSSIQKGVQTVDPTCPLCNQQTETTEHLFG 177
+++W + I PK++ F+WR +++ L + +DP+CP C+++ E+ H
Sbjct: 157 DLKTRIW-NLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALF 215
Query: 178 TCSAFVETWGLAQQ--ISNMPHTPD---PVQLIIKLLQKQT-NERDKVFWIYLLWWHWKS 231
TC W L+ I N + D + I+ +Q T ++ K+ ++L+W WK+
Sbjct: 216 TCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKA 275
Query: 232 RNLKCFNDSSLRPQEIIQL----------ATKQAKKIPTTCETNISINEEWQPPEEGTIK 281
RN FN P + + AT+ KK P+ EW+ P +K
Sbjct: 276 RNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVK 335
Query: 282 VNFDGAFN--ELGASIASLARNHKGETVM-EVVRRVEVRSALECECTALLAAVEIAINLG 338
NFD F+ +L A+ + RNH G + ++ + LE E ALLAA++ G
Sbjct: 336 CNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRG 395
Query: 339 QGPFIIEGDCKTAVDALINGPDCYPWRVRMLLLETRALGDLHTGLKFQYCPREANSSAHQ 398
+EGDC+T ++ LING + + L + + ++F + R+ N AH
Sbjct: 396 YTQVFMEGDCQTLIN-LINGISFHS-SLANHLEDISFWANKFASIQFGFIRRKGNKLAHV 453
Query: 399 LAQ 401
LA+
Sbjct: 454 LAK 456
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 113 bits (282), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 184/432 (42%), Gaps = 43/432 (9%)
Query: 9 IGSGFDIKINRDPWV---PEIA----EKIPRVNTILPVNLNRVSDLIDADTHTWKASLIR 61
+G+G DI I R W+ P A +++P ++ +VSDLID W+ +I
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIE 188
Query: 62 EVFQPSSAEAILQIPLSRRATVDRLIWMPQPQGMFSAKSYYKTVSPTHPNTRAPVDFP-- 119
+F + I ++ R +D W G ++ KS Y ++ +P +
Sbjct: 189 MLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEP 248
Query: 120 -----WSKLWKSTNIEPKVQLFIWRLVNRGLPVRSSIQKGVQTVDPTCPLCNQQTETTEH 174
+ K+WKS PK+Q F+W+ ++ LPV ++ + + C C ET H
Sbjct: 249 SLNPIYQKIWKS-QTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNH 307
Query: 175 LFGTCSAFVETWGLAQQISNMP-----HTPDPVQLIIKLLQKQTN-----ERDKVFWIYL 224
L C+ TW IS++P D + + + + N E+ +L
Sbjct: 308 LLFKCTFARLTWA----ISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWL 363
Query: 225 LWWHWKSRNLKCFNDSSLRPQEIIQLATK---------QAKKIPTTCETNISINEEWQPP 275
LW WK+RN F QE+++ A +A+ T + N S W+PP
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPP 423
Query: 276 EEGTIKVNFDGAFNELG--ASIASLARNHKGETVMEVVRRV-EVRSALECECTALLAAVE 332
+K N D +N I + RN KGE R + +++S LE E A+ AV
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVL 483
Query: 333 IAINLGQGPFIIEGDCKTAVDALINGPDCYPWRVRMLLLETRALGDLHTGLKFQYCPREA 392
I E D + ++ ++N + +P ++ + + + L T +KF + PRE
Sbjct: 484 SLSRFQYNYVIFESDSQVLIE-ILNNDEIWP-SLKPTIQDLQRLLSQFTEVKFVFIPREG 541
Query: 393 NSSAHQLAQSSL 404
N+ A ++A+ SL
Sbjct: 542 NTLAERVARESL 553
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 91.7 bits (226), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 121 SKLWKSTNIEPKVQLFIWRLVNRGLPVRSSIQKGVQTVDPTCPLCNQQTETTEHLFGTCS 180
+K+WK PK++ F+W+L++ L ++++ P C C Q+ ET++HLF C
Sbjct: 16 AKIWK-LKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCF 74
Query: 181 AFVETWGLAQQISNMPH-----TPDPVQLIIKLLQKQ--TNERDKVF--WIYLLWWHWKS 231
+ W + S +PH T ++ ++LL N + ++F I++LW WKS
Sbjct: 75 YAQQVW----RASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKS 130
Query: 232 RNLKCFNDSSLRPQEIIQLATKQAKKIPTTCETNISINEE---------------WQPPE 276
RN F S+ Q +Q A ++ T S+N++ WQ P
Sbjct: 131 RNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPP 190
Query: 277 EGTIKVNFDGAFNE--LGASIASLARNHKGETVMEVVRRV--EVRSALECECTALLAAVE 332
IK N+DGAFN A L R+ G M + + +LE E AL+ A++
Sbjct: 191 STWIKYNYDGAFNHQTRNAKAGWLMRDENG-VYMGSGQAIGSTTSDSLESEFQALIIAMQ 249
Query: 333 IAINLGQGPFIIEGDCKTAVDALINGPDCYPWRVRMLLLETRALGDLHTGLKFQYCPREA 392
A + G I EGD K V+ L+N R + E R F++ PR
Sbjct: 250 HAWSQGYRKVIFEGDSK-QVEELMNNEKLNFGRFN-WIREGRFWQKRFEEAVFKWVPRTN 307
Query: 393 NSSAHQLAQSSLIP 406
N A LA+ L P
Sbjct: 308 NQPADILAKHHLQP 321
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 91.3 bits (225), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 126/307 (41%), Gaps = 37/307 (12%)
Query: 123 LWKSTNIEPKVQLFIWRLVNRGLPVRSSIQKGVQTVDPTCPLCNQQTETTEHLFGTCSAF 182
+WK ++ PK++ F+WR V L + ++ DP C C + ET H+ C
Sbjct: 37 IWK-LHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYT 95
Query: 183 VETWGLAQQISNMPHTP-----DPVQLIIKLLQKQ-TNERDKVFWIYLLWWHWKSRNLKC 236
W A I P D + +I+L + Q TN D+ +++W WKSRN+
Sbjct: 96 QSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFL 155
Query: 237 FNDSSLRP----QEIIQLATKQAKKIPTTCETNISI-----------NEEWQPPEEGTIK 281
F P ++ IQ AT+ TT TN+ + + +W PP EG +K
Sbjct: 156 FQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVK 215
Query: 282 VNFDGAFNELGASIAS--LARNHKGETVMEVVRRVEVRS-ALECECTALLAAVEIAINLG 338
NFD + + S R G V+ +++ + +L E L A+++ G
Sbjct: 216 CNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHG 275
Query: 339 QGPFIIEGDCKTAVDALINGPDCYPWRVRMLLLETRALGDLHTGLKFQYCP-----REAN 393
E D K+ V + NG D LL T H LK YC RE N
Sbjct: 276 LRYVWFESDSKSLVTLINNGED-------HSLLGTLIYDIRHWMLKLPYCSLEFVNRERN 328
Query: 394 SSAHQLA 400
S+A LA
Sbjct: 329 SAADALA 335
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 15/200 (7%)
Query: 222 IYLLWWHWKSRNLKCFNDSSLRPQEIIQLATKQAKKIPTTCETNI----------SINEE 271
+L+W WKS N FN + + Q +++A K+ TN S N +
Sbjct: 45 FWLMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTK 104
Query: 272 WQPPEEGTIKVNFDGAFNELG--ASIASLARNHKGETVMEVVRRVEVR-SALECECTALL 328
W PP +K N+D + +E + + + RN +G + + + + R + E EC+ L+
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164
Query: 329 AAVEIAINLGQGPFIIEGDCKTAVDALINGPDCYPWRVRMLLLETRALGDLHTGLKFQYC 388
A++ + G I EGD +T + +IN P R++ L ++ ++F +
Sbjct: 165 WAIQASYGFGHKKVIFEGDNQT-ITRMINTKSSNP-RLQHFLDTIQSWIPSFESIEFSFK 222
Query: 389 PREANSSAHQLAQSSLIPPT 408
RE N A LA+ ++ T
Sbjct: 223 HREQNGCADFLAKQAIKENT 242