BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000034.1_g1190.1
(572 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00750.1 | GAG/POL/ENV polyprotein | ChrM:220830-221189 FORWA... 77 7e-17
>ATMG00750.1 | GAG/POL/ENV polyprotein | ChrM:220830-221189 FORWARD
LENGTH=119 | 201606
Length = 119
Score = 77.4 bits (189), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 227 ILQCGFYWPSIFKDTHAYCLACERCQKLGSISCRNMMPLNPILVVEVFDVWGIDFM 282
+LQ GFYWP+ FKD H + +C+ CQ+ G+ + RN MP + IL VEVFDVWGI FM
Sbjct: 35 VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90